6T51 image
Deposition Date 2019-10-15
Release Date 2019-10-30
Last Version Date 2024-05-15
Entry Detail
PDB ID:
6T51
Keywords:
Title:
NMR structure of KRAS22RT G-quadruplex forming within KRAS promoter region at physological temperature
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Conformers Calculated:
750
Conformers Submitted:
10
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Polymer Type:polydeoxyribonucleotide
Molecule:KRAS22RT
Chain IDs:A
Chain Length:22
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
1H,13C, and15N chemical shift assignments of a G-quadruplex forming sequence within the KRAS proto-oncogene promoter region.
Biomol.Nmr Assign. 12 123 127 (2018)
PMID: 29189986 DOI: 10.1007/s12104-017-9793-0

Abstact

Single stranded guanine rich DNA (or RNA) sequences adopt noncanonical secondary structures called G-quadruplexes (G4). Functionally, quadruplexes control gene transcription and regulate activities such as replication, gene recombination or alternative splicing. Hence they are potential targets for cancer, neuronal, and viral related diseases. KRAS is one of the most mutated oncogenes in the genome of cancer cells and contains a nuclease hypersensitive element (NHE) sequence capable of forming G-quadruplexes via its six runs of guanines. In our work, we are interested in the NMR structure of the major G4 scaffold formed in the KRAS NHE region with a mutated sequence of 22 residues. Here, we report 1H, 13C and 15N chemical shift assignments the G4 formed within KRAS22RT sequence.

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Primary Citation of related structures