6T44 image
Entry Detail
PDB ID:
6T44
Title:
Ovine lactoglobulin complex with decanol
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2019-10-12
Release Date:
2019-10-23
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 62
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Beta-lactoglobulin-1/B
Chain IDs:A (auth: AAA), B (auth: BBB)
Chain Length:162
Number of Molecules:2
Biological Source:Ovis aries
Ligand Molecules
Primary Citation
Conformational flexibility and ligand binding properties of ovine beta-lactoglobulin.
Acta Biochim.Pol. 66 577 584 (2019)
PMID: 31880900 DOI: 10.18388/abp.2019_2883

Abstact

Ovine β‑lactoglobulin was characterized by spectroscopic (CD), calorimetric (ITC) and X-ray structural studies. The structure of ovine β‑lactoglobulin complex with decanol showed that tight packing of molecules in the crystalline phase enforces a distortion of protein flexible loops resulting in the formation of an asymmetric dimer. The loops surrounding β-barrel in ovine lactoglobulin possessed the same conformational flexibility as observed previously in other lactoglobulins and the change of their conformation regulates the access to the binding pocket. The structure of asymmetric dimer revealed a new region in β-barrel where ligand polar group can be located. These findings indicated protein adaptability to ligand dimensions and inter- and intramolecular interactions in the crystalline phase. Calorimetric and crystallographic studies provided the experimental evidence that ovine lactoglobulin is able to bind aliphatic ligands. Thermodynamic parameters of sodium dodecyl sulfate binding determined by ITC at pH 7.5 had Ka, ΔH, TΔS and ΔG values similar to those observed for bovine and caprine protein indicating the same mechanism of ligand binding.

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Primary Citation of related structures