6T30 image
Entry Detail
PDB ID:
6T30
Title:
Streptavidin variants harbouring an artificial organocatalyst based cofactor
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2019-10-10
Release Date:
2020-11-18
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 32 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Streptavidin
Chain IDs:A (auth: B), B (auth: A)
Chain Length:159
Number of Molecules:2
Biological Source:Streptomyces avidinii
Primary Citation
An Artificial Cofactor Catalyzing the Baylis-Hillman Reaction with Designed Streptavidin as Protein Host*.
Chembiochem 22 1573 1577 (2021)
PMID: 33400831 DOI: 10.1002/cbic.202000880

Abstact

An artificial cofactor based on an organocatalyst embedded in a protein has been used to conduct the Baylis-Hillman reaction in a buffered system. As protein host, we chose streptavidin, as it can be easily crystallized and thereby supports the design process. The protein host around the cofactor was rationally designed on the basis of high-resolution crystal structures obtained after each variation of the amino acid sequence. Additionally, DFT-calculated intermediates and transition states were used to rationalize the observed activity. Finally, repeated cycles of structure determination and redesign led to a system with an up to one order of magnitude increase in activity over the bare cofactor and to the most active proteinogenic catalyst for the Baylis-Hillman reaction known today.

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