6T20 image
Deposition Date 2019-10-07
Release Date 2020-03-04
Last Version Date 2025-04-09
Entry Detail
PDB ID:
6T20
Title:
Cryo-EM structure of phalloidin-stabilized F-actin (aged)
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.70 Å
Aggregation State:
FILAMENT
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Actin, alpha skeletal muscle
Gene (Uniprot):ACTA1
Chain IDs:A, B, C, D, E
Chain Length:375
Number of Molecules:5
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:phalloidin
Chain IDs:F, G, H, I, J
Chain Length:7
Number of Molecules:5
Biological Source:synthetic construct
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
HIC A HIS modified residue
Primary Citation
Structural Effects and Functional Implications of Phalloidin and Jasplakinolide Binding to Actin Filaments.
Structure 28 437 449.e5 (2020)
PMID: 32084355 DOI: 10.1016/j.str.2020.01.014

Abstact

Actin undergoes structural transitions during polymerization, ATP hydrolysis, and subsequent release of inorganic phosphate. Several actin-binding proteins sense specific states during this transition and can thus target different regions of the actin filament. Here, we show in atomic detail that phalloidin, a mushroom toxin that is routinely used to stabilize and label actin filaments, suspends the structural changes in actin, likely influencing its interaction with actin-binding proteins. Furthermore, high-resolution cryoelectron microscopy structures reveal structural rearrangements in F-actin upon inorganic phosphate release in phalloidin-stabilized filaments. We find that the effect of the sponge toxin jasplakinolide differs from the one of phalloidin, despite their overlapping binding site and similar interactions with the actin filament. Analysis of structural conformations of F-actin suggests that stabilizing agents trap states within the natural conformational space of actin.

Legend

Protein

Chemical

Disease

Primary Citation of related structures