6SYJ image
Entry Detail
PDB ID:
6SYJ
Title:
Crystal structure of a ProM2 containing triple-helical collagen peptide.
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2019-09-30
Release Date:
2020-01-29
Method Details:
Experimental Method:
Resolution:
0.81 Å
R-Value Free:
0.13
R-Value Work:
0.12
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:ProM2 containing collagen model peptide.
Chain IDs:A, B, C
Chain Length:33
Number of Molecules:3
Biological Source:synthetic construct
Primary Citation
Triple-Helix-Stabilizing Effects in Collagen Model Peptides Containing PPII-Helix-Preorganized Diproline Modules.
Angew.Chem.Int.Ed.Engl. 59 5747 5755 (2020)
PMID: 31944532 DOI: 10.1002/anie.201914101

Abstact

Collagen model peptides (CMPs) serve as tools for understanding stability and function of the collagen triple helix and have a potential for biomedical applications. In the past, interstrand cross-linking or conformational preconditioning of proline units through stereoelectronic effects have been utilized in the design of stabilized CMPs. To further study the effects determining collagen triple helix stability we investigated a series of CMPs containing synthetic diproline-mimicking modules (ProMs), which were preorganized in a PPII-helix-type conformation by a functionalizable intrastrand C2 bridge. Results of CD-based denaturation studies were correlated with calculated (DFT) conformational preferences of the ProM units, revealing that the relative helix stability is mainly governed by an interplay of main-chain preorganization, ring-flip preference, adaptability, and steric effects. Triple helix integrity was proven by crystal structure analysis and binding to HSP47.

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