6SXI image
Deposition Date 2019-09-26
Release Date 2020-10-07
Last Version Date 2024-11-06
Entry Detail
PDB ID:
6SXI
Keywords:
Title:
Antibody-anti-idiotype complex: AP33 Fab (hepatitis C virus E2 antibody) - B2.1A scFv (anti-idiotype)
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Method Details:
Experimental Method:
Resolution:
1.85 Å
R-Value Free:
0.20
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Single chain Fv - heavy chain
Chain IDs:C (auth: A)
Chain Length:119
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Single chain Fv - light chain
Chain IDs:D (auth: B)
Chain Length:108
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Fab heavy chain
Chain IDs:A (auth: H)
Chain Length:218
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Fab light chain
Chain IDs:B (auth: L)
Chain Length:218
Number of Molecules:1
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
Development of a structural epitope mimic: an idiotypic approach to HCV vaccine design.
NPJ Vaccines 6 7 7 (2021)
PMID: 33420102 DOI: 10.1038/s41541-020-00269-1

Abstact

HCV vaccine development is stymied by the high genetic diversity of the virus and the variability of the envelope glycoproteins. One strategy to overcome this is to identify conserved, functionally important regions-such as the epitopes of broadly neutralizing antibodies (bNAbs)-and use these as a basis for structure-based vaccine design. Here, we report an anti-idiotype approach that has generated an antibody that mimics a highly conserved neutralizing epitope on HCV E2. Crucially, a mutagenesis screen was used to identify the antibody, designated B2.1 A, whose binding characteristics to the bNAb AP33 closely resemble those of the original antigen. Protein crystallography confirmed that B2.1 A is a structural mimic of the AP33 epitope. When used as an immunogen B2.1 A induced antibodies that recognized the same epitope and E2 residues as AP33 and most importantly protected against HCV challenge in a mouse model.

Legend

Protein

Chemical

Disease

Primary Citation of related structures