6SX1 image
Entry Detail
PDB ID:
6SX1
Title:
Structure of Rib Standard, a Rib domain from Lactobacillus acidophilus
Biological Source:
PDB Version:
Deposition Date:
2019-09-24
Release Date:
2019-12-18
Method Details:
Experimental Method:
Resolution:
1.25 Å
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Surface protein
Chain IDs:A
Chain Length:83
Number of Molecules:1
Biological Source:Lactobacillus acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM)
Primary Citation
Defining the remarkable structural malleability of a bacterial surface protein Rib domain implicated in infection.
Proc.Natl.Acad.Sci.USA 116 26540 26548 (2019)
PMID: 31818940 DOI: 10.1073/pnas.1911776116

Abstact

Streptococcus groups A and B cause serious infections, including early onset sepsis and meningitis in newborns. Rib domain-containing surface proteins are found associated with invasive strains and elicit protective immunity in animal models. Yet, despite their apparent importance in infection, the structure of the Rib domain was previously unknown. Structures of single Rib domains of differing length reveal a rare case of domain atrophy through deletion of 2 core antiparallel strands, resulting in the loss of an entire sheet of the β-sandwich from an immunoglobulin-like fold. Previously, observed variation in the number of Rib domains within these bacterial cell wall-attached proteins has been suggested as a mechanism of immune evasion. Here, the structure of tandem domains, combined with molecular dynamics simulations and small angle X-ray scattering, suggests that variability in Rib domain number would result in differential projection of an N-terminal host-colonization domain from the bacterial surface. The identification of 2 further structures where the typical B-D-E immunoglobulin β-sheet is replaced with an α-helix further confirms the extensive structural malleability of the Rib domain.

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