6SWR image
Deposition Date 2019-09-23
Release Date 2020-04-15
Last Version Date 2024-11-20
Entry Detail
PDB ID:
6SWR
Title:
Crystal structure of the lysosomal potassium channel MtTMEM175 T38A mutant soaked with zinc
Biological Source:
Method Details:
Experimental Method:
Resolution:
3.20 Å
R-Value Free:
0.29
R-Value Work:
0.26
Space Group:
P 21 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Nanobody, Maltose/maltodextrin-binding periplasmic protein,Maltodextrin-binding protein,Maltose/maltodextrin-binding periplasmic protein
Gene (Uniprot):malE
Chain IDs:A, C (auth: D)
Chain Length:486
Number of Molecules:2
Biological Source:Lama glama, Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Molecule:Uncharacterized protein
Gene (Uniprot):Ftrac_2467
Chain IDs:B, D (auth: E)
Chain Length:255
Number of Molecules:2
Biological Source:Marivirga tractuosa (strain ATCC 23168 / DSM 4126 / NBRC 15989 / NCIMB 1408 / VKM B-1430 / H-43)
Peptide-like Molecules
PRD_900001
Primary Citation
Structural basis for ion selectivity in TMEM175 K + channels.
Elife 9 ? ? (2020)
PMID: 32267231 DOI: 10.7554/eLife.53683

Abstact

The TMEM175 family constitutes recently discovered K+channels that are important for autophagosome turnover and lysosomal pH regulation and are associated with the early onset of Parkinson Disease. TMEM175 channels lack a P-loop selectivity filter, a hallmark of all known K+ channels, raising the question how selectivity is achieved. Here, we report the X-ray structure of a closed bacterial TMEM175 channel in complex with a nanobody fusion-protein disclosing bound K+ ions. Our analysis revealed that a highly conserved layer of threonine residues in the pore conveys a basal K+ selectivity. An additional layer comprising two serines in human TMEM175 increases selectivity further and renders this channel sensitive to 4-aminopyridine and Zn2+. Our findings suggest that large hydrophobic side chains occlude the pore, forming a physical gate, and that channel opening by iris-like motions simultaneously relocates the gate and exposes the otherwise concealed selectivity filter to the pore lumen.

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Primary Citation of related structures