6SV2 image
Deposition Date 2019-09-17
Release Date 2020-07-29
Last Version Date 2024-11-20
Entry Detail
PDB ID:
6SV2
Keywords:
Title:
Human prion protein (PrP) fragment 119-231 (G127V M129 variant) complexed to ICSM 18 (anti-Prp therapeutic antibody) Fab fragment
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Mus musculus (Taxon ID: 10090)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.25
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
P 63 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Major prion protein
Gene (Uniprot):PRNP
Chain IDs:C (auth: A)
Chain Length:113
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:ICSM 18-ANTI-PRP THERAPEUTIC FAB HEAVY CHAIN
Chain IDs:B (auth: H)
Chain Length:215
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:ICSM 18-ANTI-PRP THERAPEUTIC FAB LIGHT CHAIN
Chain IDs:A (auth: L)
Chain Length:212
Number of Molecules:1
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
Structural effects of the highly protective V127 polymorphism on human prion protein.
Commun Biol 3 402 402 (2020)
PMID: 32728168 DOI: 10.1038/s42003-020-01126-6

Abstact

Prion diseases, a group of incurable, lethal neurodegenerative disorders of mammals including humans, are caused by prions, assemblies of misfolded host prion protein (PrP). A single point mutation (G127V) in human PrP prevents prion disease, however the structural basis for its protective effect remains unknown. Here we show that the mutation alters and constrains the PrP backbone conformation preceding the PrP β-sheet, stabilising PrP dimer interactions by increasing intermolecular hydrogen bonding. It also markedly changes the solution dynamics of the β2-α2 loop, a region of PrP structure implicated in prion transmission and cross-species susceptibility. Both of these structural changes may affect access to protein conformers susceptible to prion formation and explain its profound effect on prion disease.

Legend

Protein

Chemical

Disease

Primary Citation of related structures