6SUA image
Deposition Date 2019-09-13
Release Date 2020-06-17
Last Version Date 2024-11-13
Entry Detail
PDB ID:
6SUA
Keywords:
Title:
Structure of the high affinity engineered lipocalin C1B12 in complex with the mouse CD98 heavy chain ectodomain
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Mus musculus (Taxon ID: 10090)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.75 Å
R-Value Free:
0.27
R-Value Work:
0.21
R-Value Observed:
0.22
Space Group:
P 21 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Neutrophil gelatinase-associated lipocalin
Gene (Uniprot):LCN2
Mutagens:Q28H, A40G, I41N, Q49L, S68D, R72I, K73D, D77H, W79L, R81N, C87S, N96S, Y100T, P101L, L103S, Y106R, K125W, S127H, Y132W, K134Y
Chain IDs:A, C
Chain Length:186
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:4F2 cell-surface antigen heavy chain
Gene (Uniprot):Slc3a2
Chain IDs:B, D
Chain Length:434
Number of Molecules:2
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
Design of a surrogate Anticalin protein directed against CD98hc for preclinical studies in mice.
Protein Sci. 29 1774 1783 (2020)
PMID: 32463547 DOI: 10.1002/pro.3894

Abstact

The human CD98 heavy chain (CD98hc) offers a promising biomedical target both for tumor therapy and for drug delivery to the brain. We have previously developed a cognate Anticalin protein with picomolar affinity and demonstrated its effectiveness in a xenograft animal model. Due to the lack of cross-reactivity with the murine ortholog, we now report the development and X-ray structural analysis of an Anticalin with high affinity toward CD98hc from mouse. This binding protein recognizes the same protruding epitope loop-despite distinct structure-in the membrane receptor ectodomain as the Anticalin selected against human CD98hc. Thus, this surrogate Anticalin should be useful for the preclinical assessment of CD98hc targeting in vivo and support the translational development for medical application in humans.

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Protein

Chemical

Disease

Primary Citation of related structures
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