ISDA: 6ST3

Deposition Date 2019-09-10

Release Date 2019-12-04

Last Version Date 2024-01-24

Entry Detail

PDB ID:

6ST3

Keywords:

OXIDOREDUCTASE

Title:

HIF prolyl hydroxylase 2 (PHD2/ EGLN1) in complex with 4-hydroxy-N-(4-phenoxybenzyl)-2-(1H-pyrazol-1-yl)pyrimidine-5-carboxamide

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli BL21(DE3)

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.43 Å

R-Value Free:

0.21

R-Value Work:

0.19

R-Value Observed:

0.19

Space Group:

P 21 2 21

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Egl nine homolog 1
Gene (Uniprot):EGLN1
Chain IDs:A, B
Chain Length:233
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:Q9GZT9 Pfam ID:PF13640 EC:1.14.11.2

Ligand Molecules

FMT

LUW

Primary Citation

Structure-Activity Relationship and Crystallographic Studies on 4-Hydroxypyrimidine HIF Prolyl Hydroxylase Domain Inhibitors.

Holt-Martyn, J.P, Chowdhury, R, Tumber, A, Yeh, T.L, Abboud, M.I, Lippl, K, Lohans, C.T, Langley, G.W, Figg Jr, W, McDonough, M.A, Pugh, C.W, Ratcliffe, P.J, Schofield, C.J, Chowdhury, R, Candela-Lena, J.I, Chan, M.C, Greenald, D.J, Yeoh, K.K, Tian, Y.M, McDonough, M.A, Tumber, A, Rose, N.R, Conejo-Garcia, A, Demetriades, M, Mathavan, S, Kawamura, A, Lee, M.K, van Eeden, F, Pugh, C.W, Ratcliffe, P.J, Schofield, C.J.Show

Chemmedchem 15 270 273 (2020)

PMID: 31751494 DOI: 10.1002/cmdc.201900557

Abstact

The 2-oxoglutarate-dependent hypoxia inducible factor prolyl hydroxylases (PHDs) are targets for treatment of a variety of diseases including anaemia. One PHD inhibitor is approved for use for the treatment of renal anaemia and others are in late stage clinical trials. The number of reported templates for PHD inhibition is limited. We report structure-activity relationship and crystallographic studies on a promising class of 4-hydroxypyrimidine-containing PHD inhibitors.

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Protein

Chemical

Disease

Primary Citation of related structures

Abstact

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