6SRU image
Deposition Date 2019-09-06
Release Date 2021-02-03
Last Version Date 2024-10-23
Entry Detail
PDB ID:
6SRU
Keywords:
Title:
Structure of Ig-like V-type domian of mouse Programmed cell death 1 ligand 1 (PD-L1)
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.53 Å
R-Value Free:
0.27
R-Value Work:
0.22
R-Value Observed:
0.23
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Programmed cell death 1 ligand 1
Gene (Uniprot):Cd274
Chain IDs:A, B, C, D, E, F, G, H, I, J
Chain Length:118
Number of Molecules:10
Biological Source:Mus musculus
Primary Citation
Human and mouse PD-L1: similar molecular structure, but different druggability profiles.
Iscience 24 101960 101960 (2021)
PMID: 33437940 DOI: 10.1016/j.isci.2020.101960

Abstact

In the development of PD-L1-blocking therapeutics, it is essential to transfer initial in vitro findings into proper in vivo animal models. Classical immunocompetent mice are attractive due to high accessibility and low experimental costs. However, it is unknown whether inter-species differences in PD-L1 sequence and structure would allow for human-mouse cross applications. Here, we disclose the first structure of the mouse (m) PD-L1 and analyze its similarity to the human (h) PD-L1. We show that mPD-L1 interacts with hPD-1 and provides a negative signal toward activated Jurkat T cells. We also show major differences in druggability between the hPD-L1 and mPD-L1 using therapeutic antibodies, a macrocyclic peptide, and small molecules. Our study indicates that while the amino acid sequence is well conserved between the hPD-L1 and mPD-L1 and overall structures are almost identical, crucial differences determine the interaction with anti-PD-L1 agents, that cannot be easily predicted in silico.

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