6SPI image
Deposition Date 2019-09-01
Release Date 2020-03-18
Last Version Date 2024-10-23
Entry Detail
PDB ID:
6SPI
Keywords:
Title:
A4V MUTANT OF HUMAN SOD1 WITH EBSELEN DERIVATIVE 4
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.24
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Superoxide dismutase [Cu-Zn]
Gene (Uniprot):SOD1
Mutagens:A4V
Chain IDs:A, B, C, D, E, F, G, H, I, J, K, L
Chain Length:154
Number of Molecules:12
Biological Source:Homo sapiens
Primary Citation
Ebselen as template for stabilization of A4V mutant dimer for motor neuron disease therapy.
Commun Biol 3 97 97 (2020)
PMID: 32139772 DOI: 10.1038/s42003-020-0826-3

Abstact

Mutations to the gene encoding superoxide dismutase-1 (SOD1) were the first genetic elements discovered that cause motor neuron disease (MND). These mutations result in compromised SOD1 dimer stability, with one of the severest and most common mutations Ala4Val (A4V) displaying a propensity to monomerise and aggregate leading to neuronal death. We show that the clinically used ebselen and related analogues promote thermal stability of A4V SOD1 when binding to Cys111 only. We have developed a A4V SOD1 differential scanning fluorescence-based assay on a C6S mutation background that is effective in assessing suitability of compounds. Crystallographic data show that the selenium atom of these compounds binds covalently to A4V SOD1 at Cys111 at the dimer interface, resulting in stabilisation. This together with chemical amenability for hit expansion of ebselen and its on-target SOD1 pharmacological chaperone activity holds remarkable promise for structure-based therapeutics for MND using ebselen as a template.

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Primary Citation of related structures