6SNW image
Deposition Date 2019-08-27
Release Date 2020-01-15
Last Version Date 2024-11-06
Entry Detail
PDB ID:
6SNW
Keywords:
Title:
Structure of Coxsackievirus A10 complexed with its receptor KREMEN1
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Coxsackievirus A10 (Taxon ID: 42769)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.90 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Capsid protein VP1
Chain IDs:A
Chain Length:298
Number of Molecules:1
Biological Source:Coxsackievirus A10
Polymer Type:polypeptide(L)
Molecule:Coxsackievirus VP2
Chain IDs:B
Chain Length:255
Number of Molecules:1
Biological Source:Coxsackievirus A10
Polymer Type:polypeptide(L)
Molecule:Capsid protein VP3
Chain IDs:C
Chain Length:240
Number of Molecules:1
Biological Source:Coxsackievirus A10
Polymer Type:polypeptide(L)
Molecule:Coxsackievirus VP4
Chain IDs:D
Chain Length:69
Number of Molecules:1
Biological Source:Coxsackievirus A10
Polymer Type:polypeptide(L)
Molecule:Kremen protein 1
Gene (Uniprot):KREMEN1
Chain IDs:E
Chain Length:378
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Hand-foot-and-mouth disease virus receptor KREMEN1 binds the canyon of Coxsackie Virus A10.
Nat Commun 11 38 38 (2020)
PMID: 31911601 DOI: 10.1038/s41467-019-13936-2

Abstact

Coxsackievirus A10 (CV-A10) is responsible for an escalating number of severe infections in children, but no prophylactics or therapeutics are currently available. KREMEN1 (KRM1) is the entry receptor for the largest receptor-group of hand-foot-and-mouth disease causing viruses, which includes CV-A10. We report here structures of CV-A10 mature virus alone and in complex with KRM1 as well as of the CV-A10 A-particle. The receptor spans the viral canyon with a large footprint on the virus surface. The footprint has some overlap with that seen for the neonatal Fc receptor complexed with enterovirus E6 but is larger and distinct from that of another enterovirus receptor SCARB2. Reduced occupancy of a particle-stabilising pocket factor in the complexed virus and the presence of both unbound and expanded virus particles suggests receptor binding initiates a cascade of conformational changes that produces expanded particles primed for viral uncoating.

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Protein

Chemical

Disease

Primary Citation of related structures