6SK0 image
Deposition Date 2019-08-14
Release Date 2020-04-29
Last Version Date 2024-05-22
Entry Detail
PDB ID:
6SK0
Keywords:
Title:
The VgrG spike from the Type 6 secretion system
Biological Source:
Source Organism:
Escherichia coli (Taxon ID: 562)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.30 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative type VI secretion protein
Gene (Uniprot):vgrG
Chain IDs:A, B, C
Chain Length:841
Number of Molecules:3
Biological Source:Escherichia coli
Ligand Molecules
Primary Citation
Structural basis for loading and inhibition of a bacterial T6SS phospholipase effector by the VgrG spike.
Embo J. 39 e104129 e104129 (2020)
PMID: 32350888 DOI: 10.15252/embj.2019104129

Abstact

The bacterial type VI secretion system (T6SS) is a macromolecular machine that injects effectors into prokaryotic and eukaryotic cells. The mode of action of the T6SS is similar to contractile phages: the contraction of a sheath structure pushes a tube topped by a spike into target cells. Effectors are loaded onto the spike or confined into the tube. In enteroaggregative Escherichia coli, the Tle1 phospholipase binds the C-terminal extension of the VgrG trimeric spike. Here, we purify the VgrG-Tle1 complex and show that a VgrG trimer binds three Tle1 monomers and inhibits their activity. Using covalent cross-linking coupled to high-resolution mass spectrometry, we provide information on the sites of contact and further identify the requirement for a Tle1 N-terminal secretion sequence in complex formation. Finally, we report the 2.6-Å-resolution cryo-electron microscopy tri-dimensional structure of the (VgrG)3 -(Tle1)3 complex revealing how the effector binds its cargo, and how VgrG inhibits Tle1 phospholipase activity. The inhibition of Tle1 phospholipase activity once bound to VgrG suggests that Tle1 dissociation from VgrG is required upon delivery.

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