6SJZ image
Entry Detail
PDB ID:
6SJZ
Keywords:
Title:
HsNMT1 in complex with both MyrCoA and Acetylated-GNCFSKPR substrates
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2019-08-14
Release Date:
2020-03-18
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Glycylpeptide N-tetradecanoyltransferase 1
Chain IDs:A, B
Chain Length:402
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Apoptosis-inducing factor 3
Mutations:G3N, P8R
Chain IDs:C (auth: E), D (auth: F)
Chain Length:9
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
High-resolution snapshots of human N-myristoyltransferase in action illuminate a mechanism promoting N-terminal Lys and Gly myristoylation.
Nat Commun 11 1132 1132 (2020)
PMID: 32111831 DOI: 10.1038/s41467-020-14847-3

Abstact

The promising drug target N-myristoyltransferase (NMT) catalyses an essential protein modification thought to occur exclusively at N-terminal glycines (Gly). Here, we present high-resolution human NMT1 structures co-crystallised with reactive cognate lipid and peptide substrates, revealing high-resolution snapshots of the entire catalytic mechanism from the initial to final reaction states. Structural comparisons, together with biochemical analysis, provide unforeseen details about how NMT1 reaches a catalytically competent conformation in which the reactive groups are brought into close proximity to enable catalysis. We demonstrate that this mechanism further supports efficient and unprecedented myristoylation of an N-terminal lysine side chain, providing evidence that NMT acts both as N-terminal-lysine and glycine myristoyltransferase.

Legend

Protein

Chemical

Disease

Primary Citation of related structures