6SJ6 image
Entry Detail
PDB ID:
6SJ6
EMDB ID:
Keywords:
Title:
Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus
Biological Source:
PDB Version:
Deposition Date:
2019-08-12
Release Date:
2020-04-08
Method Details:
Experimental Method:
Resolution:
3.23 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L28
Chain IDs:T (auth: 0)
Chain Length:62
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L29
Chain IDs:U (auth: 1)
Chain Length:69
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L30
Chain IDs:V (auth: 2)
Chain Length:59
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L32
Chain IDs:W (auth: 4)
Chain Length:58
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L34
Chain IDs:X (auth: 6)
Chain Length:45
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L35
Chain IDs:Y (auth: 7)
Chain Length:66
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)
Polymer Type:polypeptide(L)
Description:Ribosomal silencing factor RsfS
Chain IDs:Z (auth: 9)
Chain Length:117
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)
Polymer Type:polyribonucleotide
Description:23S ribosomal RNA
Chain IDs:A
Chain Length:2923
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)
Polymer Type:polyribonucleotide
Description:5S ribosomal RNA
Chain IDs:B
Chain Length:115
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L2
Chain IDs:C (auth: D)
Chain Length:277
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L3
Chain IDs:D (auth: E)
Chain Length:220
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L4
Chain IDs:E (auth: F)
Chain Length:207
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L13
Chain IDs:F (auth: M)
Chain Length:145
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L14
Chain IDs:G (auth: N)
Chain Length:122
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L15
Chain IDs:H (auth: O)
Chain Length:146
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L16
Chain IDs:I (auth: P)
Chain Length:144
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L17
Chain IDs:J (auth: Q)
Chain Length:122
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L18
Chain IDs:K (auth: R)
Chain Length:119
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L19
Chain IDs:L (auth: S)
Chain Length:116
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L20
Chain IDs:M (auth: T)
Chain Length:118
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L21
Chain IDs:N (auth: U)
Chain Length:102
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L22
Chain IDs:O (auth: V)
Chain Length:117
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L23
Chain IDs:P (auth: W)
Chain Length:91
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L24
Chain IDs:Q (auth: X)
Chain Length:105
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L25
Chain IDs:R (auth: Y)
Chain Length:217
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L27
Chain IDs:S (auth: Z)
Chain Length:94
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)
Primary Citation
Mechanism of ribosome shutdown by RsfS in Staphylococcus aureus revealed by integrative structural biology approach.
Nat Commun 11 1656 1656 (2020)
PMID: 32245971 DOI: 10.1038/s41467-020-15517-0

Abstact

For the sake of energy preservation, bacteria, upon transition to stationary phase, tone down their protein synthesis. This process is favored by the reversible binding of small stress-induced proteins to the ribosome to prevent unnecessary translation. One example is the conserved bacterial ribosome silencing factor (RsfS) that binds to uL14 protein onto the large ribosomal subunit and prevents its association with the small subunit. Here we describe the binding mode of Staphylococcus aureus RsfS to the large ribosomal subunit and present a 3.2 Å resolution cryo-EM reconstruction of the 50S-RsfS complex together with the crystal structure of uL14-RsfS complex solved at 2.3 Å resolution. The understanding of the detailed landscape of RsfS-uL14 interactions within the ribosome shed light on the mechanism of ribosome shutdown in the human pathogen S. aureus and might deliver a novel target for pharmacological drug development and treatment of bacterial infections.

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