6SIF image
Deposition Date 2019-08-09
Release Date 2020-08-26
Last Version Date 2024-05-15
Entry Detail
PDB ID:
6SIF
Title:
Epidermicin antimicrobial protein from Staphylococcus epidermidis
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.69 Å
R-Value Free:
0.26
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Epidermicin locus structural protein
Chain IDs:A, B, C, D, E, F, G, H
Chain Length:51
Number of Molecules:8
Biological Source:Staphylococcus epidermidis
Ligand Molecules
Primary Citation
Flowering Poration-A Synergistic Multi-Mode Antibacterial Mechanism by a Bacteriocin Fold.
Iscience 23 101423 101423 (2020)
PMID: 32795916 DOI: 10.1016/j.isci.2020.101423

Abstact

Bacteriocins are a distinct family of antimicrobial proteins postulated to porate bacterial membranes. However, direct experimental evidence of pore formation by these proteins is lacking. Here we report a multi-mode poration mechanism induced by four-helix bacteriocins, epidermicin NI01 and aureocin A53. Using a combination of crystallography, spectroscopy, bioassays, and nanoscale imaging, we established that individual two-helix segments of epidermicin retain antibacterial activity but each of these segments adopts a particular poration mode. In the intact protein these segments act synergistically to balance out antibacterial and hemolytic activities. The study sets a precedent of multi-mode membrane disruption advancing the current understanding of structure-activity relationships in pore-forming proteins.

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Primary Citation of related structures