6SH9 image
Deposition Date 2019-08-06
Release Date 2019-11-06
Last Version Date 2024-11-13
Entry Detail
PDB ID:
6SH9
Keywords:
Title:
EngBF DARPin Fusion 4b D12
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.19
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 65
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Endo-alpha-N-acetylgalactosaminidase,DARPin 4b D12
Gene (Uniprot):engBF
Chain IDs:A (auth: B)
Chain Length:1357
Number of Molecules:1
Biological Source:Bifidobacterium longum subsp. longum JCM 1217, synthetic construct
Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein gp160
Gene (Uniprot):env
Chain IDs:B (auth: E)
Chain Length:14
Number of Molecules:1
Biological Source:Human immunodeficiency virus 1
Primary Citation
Structural analysis of biological targets by host:guest crystal lattice engineering.
Sci Rep 9 15199 15199 (2019)
PMID: 31645583 DOI: 10.1038/s41598-019-51017-y

Abstact

To overcome the laborious identification of crystallisation conditions for protein X-ray crystallography, we developed a method where the examined protein is immobilised as a guest molecule in a universal host lattice. We applied crystal engineering to create a generic crystalline host lattice under reproducible, predefined conditions and analysed the structures of target guest molecules of different size, namely two 15-mer peptides and green fluorescent protein (sfGFP). A fusion protein with an N-terminal endo-α-N-acetylgalactosaminidase (EngBF) domain and a C-terminal designed ankyrin repeat protein (DARPin) domain establishes the crystal lattice. The target is recruited into the host lattice, always in the same crystal form, through binding to the DARPin. The target structures can be determined rapidly from difference Fourier maps, whose quality depends on the size of the target and the orientation of the DARPin.

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Primary Citation of related structures