6SGN image
Deposition Date 2019-08-05
Release Date 2020-02-05
Last Version Date 2024-01-24
Entry Detail
PDB ID:
6SGN
Keywords:
Title:
Crystal structure of monooxygenase RutA complexed with 2,4-dimethoxypyrimidine.
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.26
R-Value Work:
0.20
Space Group:
P 31 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Pyrimidine monooxygenase RutA
Gene (Uniprot):rutA
Chain IDs:A (auth: AAA)
Chain Length:363
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Primary Citation
Aminoperoxide adducts expand the catalytic repertoire of flavin monooxygenases.
Nat.Chem.Biol. 16 556 563 (2020)
PMID: 32066967 DOI: 10.1038/s41589-020-0476-2

Abstact

One of the hallmark reactions catalyzed by flavin-dependent enzymes is the incorporation of an oxygen atom derived from dioxygen into organic substrates. For many decades, these flavin monooxygenases were assumed to use exclusively the flavin-C4a-(hydro)peroxide as their oxygen-transferring intermediate. We demonstrate that flavoenzymes may instead employ a flavin-N5-peroxide as a soft α-nucleophile for catalysis, which enables chemistry not accessible to canonical monooxygenases. This includes, for example, the redox-neutral cleavage of carbon-hetero bonds or the dehalogenation of inert environmental pollutants via atypical oxygenations. We furthermore identify a shared structural motif for dioxygen activation and N5-functionalization, suggesting a conserved pathway that may be operative in numerous characterized and uncharacterized flavoenzymes from diverse organisms. Our findings show that overlooked flavin-N5-oxygen adducts are more widespread and may facilitate versatile chemistry, thus upending the notion that flavin monooxygenases exclusively function as nature's equivalents to organic peroxides in synthetic chemistry.

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