6SGB image
Deposition Date 2019-08-03
Release Date 2019-09-25
Last Version Date 2024-11-13
Entry Detail
PDB ID:
6SGB
Keywords:
Title:
mt-SSU assemblosome of Trypanosoma brucei
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.30 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polyribonucleotide
Molecule:9S rRNA
Chain IDs:RB (auth: CA)
Chain Length:620
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mS3m
Chain IDs:SB (auth: CC)
Chain Length:74
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:uS5m
Chain IDs:A (auth: CE)
Chain Length:435
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:bS6m
Gene (Uniprot):Tb10.70.4850
Chain IDs:B (auth: CF)
Chain Length:160
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:uS8m
Chain IDs:C (auth: CH)
Chain Length:282
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:uS9m
Gene (Uniprot):Tb08.28F14.630
Chain IDs:TB (auth: CI)
Chain Length:181
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:uS10m
Chain IDs:UB (auth: CJ)
Chain Length:817
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:uS11m
Gene (Uniprot):Tb10.406.0510
Chain IDs:D (auth: CK)
Chain Length:874
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:uS14m
Gene (Uniprot):Tb08.29O9.64
Chain IDs:VB (auth: CN)
Chain Length:250
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:uS15m
Gene (Uniprot):TB927.1.1200
Chain IDs:E (auth: CO)
Chain Length:429
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:bS16m
Gene (Uniprot):Tb11.02.5670
Chain IDs:F (auth: CP)
Chain Length:187
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:uS17m
Chain IDs:G (auth: CQ)
Chain Length:336
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:bS18m
Chain IDs:H (auth: CR)
Chain Length:320
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:uS19m
Chain IDs:WB (auth: CS)
Chain Length:244
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mS22
Gene (Uniprot):Tb09.211.2430
Chain IDs:I (auth: Ca)
Chain Length:620
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mS23
Chain IDs:J (auth: Cb)
Chain Length:311
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mS26
Gene (Uniprot):Tb09.211.3000
Chain IDs:K (auth: Cd)
Chain Length:440
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mS29
Gene (Uniprot):Tb06.3A7.780
Chain IDs:XB (auth: Cg)
Chain Length:498
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mS33
Gene (Uniprot):Tb03.27F10.720
Chain IDs:YB (auth: Ci)
Chain Length:181
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mS34
Gene (Uniprot):Tb08.5H5.370
Chain IDs:L (auth: Cj)
Chain Length:817
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mS35
Gene (Uniprot):Tb11.47.0024
Chain IDs:ZB (auth: Ck)
Chain Length:874
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mS38
Gene (Uniprot):Tb07.29K4.740
Chain IDs:M (auth: Cn)
Chain Length:250
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mS41
Gene (Uniprot):Tb10.26.0750
Chain IDs:N (auth: Cp)
Chain Length:187
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mS49
Chain IDs:AC (auth: DB)
Chain Length:1181
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mS50
Chain IDs:BC (auth: DC)
Chain Length:1165
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mS51 (KRIPP1)
Chain IDs:O (auth: DD)
Chain Length:812
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mS52
Gene (Uniprot):Tb11.02.0130
Chain IDs:CC (auth: DE)
Chain Length:747
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mS53
Chain IDs:DC (auth: DF)
Chain Length:666
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mS54
Chain IDs:EC (auth: DG)
Chain Length:631
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mS55 (KRIPP8)
Chain IDs:FC (auth: DH)
Chain Length:581
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mS56
Chain IDs:P (auth: DI)
Chain Length:407
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mS57
Gene (Uniprot):Tb06.4M18.330
Chain IDs:GC (auth: DJ)
Chain Length:396
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mS58
Chain IDs:HC (auth: DK)
Chain Length:324
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mS59
Chain IDs:Q (auth: DL)
Chain Length:307
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mS62 (KRIPP14)
Gene (Uniprot):Tb11.01.3300
Chain IDs:R (auth: DO)
Chain Length:282
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mS63 (KRIPP16)
Chain IDs:S (auth: DP)
Chain Length:274
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mS65
Chain IDs:T (auth: DR)
Chain Length:270
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mS67
Gene (Uniprot):Tb06.30P15.560
Chain IDs:IC (auth: DT)
Chain Length:247
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mS68
Chain IDs:U (auth: DU)
Chain Length:228
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mS69
Gene (Uniprot):Tb08.4A8.150
Chain IDs:JC (auth: DV)
Chain Length:183
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mS70
Chain IDs:KC (auth: DW)
Chain Length:179
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mS71
Gene (Uniprot):Tb11.01.2920
Chain IDs:LC (auth: DX)
Chain Length:169
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mS72
Gene (Uniprot):Tb07.13M20.50
Chain IDs:MC (auth: DY)
Chain Length:163
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mS73
Gene (Uniprot):Tb06.26G9.560
Chain IDs:V (auth: DZ)
Chain Length:94
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mt-SAF1 (RSM22)
Gene (Uniprot):Tb11.02.2710
Chain IDs:NC (auth: F1)
Chain Length:1041
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mt-SAF2 (KRIPP2)
Chain IDs:W (auth: F2)
Chain Length:1024
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mt-SAF3
Gene (Uniprot):Tb09.211.0950
Chain IDs:X (auth: F3)
Chain Length:966
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mt-SAF4
Chain IDs:OC (auth: F4)
Chain Length:811
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mt-SAF5
Chain IDs:Y (auth: F5)
Chain Length:754
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mt-SAF6
Gene (Uniprot):Tb09.160.1280
Chain IDs:Z (auth: F6)
Chain Length:676
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mt-SAF7 (KRIPP10)
Gene (Uniprot):Tb08.4A8.560
Chain IDs:AA (auth: F7)
Chain Length:679
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mt-SAF8
Chain IDs:BA (auth: F8)
Chain Length:726
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mt-SAF9
Chain IDs:CA (auth: F9)
Chain Length:608
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mt-SAF10
Gene (Uniprot):Tb11.18.0009
Chain IDs:DA (auth: FA)
Chain Length:171
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mt-SAF11
Chain IDs:EA (auth: FB), FA (auth: FC)
Chain Length:151
Number of Molecules:2
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mt-SAF12 (KRIPP18)
Gene (Uniprot):Tb06.3D8.320
Chain IDs:PC (auth: FD)
Chain Length:143
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mt-SAF13
Chain IDs:GA (auth: FE)
Chain Length:123
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mt-SAF14
Gene (Uniprot):Tb08.28F14.650
Chain IDs:QC (auth: FF)
Chain Length:474
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mt-SAF15
Chain IDs:RC (auth: FG)
Chain Length:463
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mt-SAF16
Chain IDs:SC (auth: FH)
Chain Length:457
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mt-SAF17
Chain IDs:TC (auth: FI)
Chain Length:445
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mt-SAF18
Chain IDs:HA (auth: FJ)
Chain Length:362
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mt-SAF19
Gene (Uniprot):Tb07.21H15.310
Chain IDs:UC (auth: FK)
Chain Length:372
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mt-SAF20
Chain IDs:VC (auth: FL)
Chain Length:353
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mt-SAF21
Chain IDs:IA (auth: FM), JA (auth: FN)
Chain Length:370
Number of Molecules:2
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mt-SAF22 (KRIPP17)
Gene (Uniprot):Tb10.26.0050
Chain IDs:KA (auth: FO)
Chain Length:334
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mt-SAF23
Chain IDs:LA (auth: FP)
Chain Length:349
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mt-SAF24
Gene (Uniprot):Tb10.61.0090
Chain IDs:MA (auth: FQ), NA (auth: FR), OA (auth: FS), PA (auth: FT), QA (auth: FU)
Chain Length:307
Number of Molecules:5
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mt-SAF25
Gene (Uniprot):Tb10.70.6030
Chain IDs:WC (auth: FV)
Chain Length:264
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mt-SAF26
Gene (Uniprot):Tb09.160.2100
Chain IDs:RA (auth: FW)
Chain Length:263
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mt-SAF27 (KRIPP11)
Gene (Uniprot):Tb08.11J15.790
Chain IDs:SA (auth: FX)
Chain Length:239
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mt-SAF28
Chain IDs:TA (auth: FY)
Chain Length:188
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mt-SAF29
Chain IDs:UA (auth: FZ)
Chain Length:178
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mt-SAF30
Gene (Uniprot):Tb07.29K4.100
Chain IDs:VA (auth: Fa)
Chain Length:171
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mt-SAF31
Gene (Uniprot):Tb04.2L9.550
Chain IDs:WA (auth: Fb)
Chain Length:151
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mt-SAF32
Gene (Uniprot):Tb03.27F10.580
Chain IDs:XA (auth: Fc)
Chain Length:579
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mt-SAF33
Gene (Uniprot):Tb04.2L9.680
Chain IDs:YA (auth: Fd)
Chain Length:143
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mt-SAF34
Gene (Uniprot):Tb11.03.0725
Chain IDs:XC (auth: Fe)
Chain Length:123
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:UNK-A
Chain IDs:ZA (auth: UA)
Chain Length:47
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:UNK-B, UNK-k
Chain IDs:AB (auth: UB), ID (auth: Uk)
Chain Length:27
Number of Molecules:2
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:UNK-C
Chain IDs:BB (auth: UC)
Chain Length:12
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:UNK-D, UNK-M, UNK-Q, UNK-f
Chain IDs:CB (auth: UD), LB (auth: UM), PB (auth: UQ), DD (auth: Uf)
Chain Length:59
Number of Molecules:4
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:UNK-E, UNK-P
Chain IDs:DB (auth: UE), OB (auth: UP)
Chain Length:45
Number of Molecules:2
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:UNK-F, UNK-m
Chain IDs:EB (auth: UF), KD (auth: Um)
Chain Length:9
Number of Molecules:2
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:UNK-G
Chain IDs:FB (auth: UG)
Chain Length:167
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:UNK-H
Chain IDs:GB (auth: UH)
Chain Length:5
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:UNK-I, UNK-N
Chain IDs:HB (auth: UI), MB (auth: UN)
Chain Length:32
Number of Molecules:2
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:UNK-J
Chain IDs:IB (auth: UJ)
Chain Length:16
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:UNK-K
Chain IDs:JB (auth: UK)
Chain Length:24
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:UNK-L
Chain IDs:KB (auth: UL)
Chain Length:22
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:UNK-O
Chain IDs:NB (auth: UO)
Chain Length:30
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:UNK-Y
Chain IDs:QB (auth: UY)
Chain Length:468
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:UNK-a
Chain IDs:YC (auth: Ua)
Chain Length:47
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:UNK-b
Chain IDs:ZC (auth: Ub)
Chain Length:27
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:UNK-c
Chain IDs:AD (auth: Uc)
Chain Length:12
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:UNK-d
Chain IDs:BD (auth: Ud)
Chain Length:59
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:UNK-e
Chain IDs:CD (auth: Ue)
Chain Length:45
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:UNK-g
Chain IDs:ED (auth: Ug)
Chain Length:167
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:UNK-h
Chain IDs:FD (auth: Uh)
Chain Length:5
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:UNK-i
Chain IDs:GD (auth: Ui)
Chain Length:32
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:UNK-j
Chain IDs:HD (auth: Uj)
Chain Length:16
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:UNK-l
Chain IDs:JD (auth: Ul)
Chain Length:22
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:UNK-x
Chain IDs:LD (auth: Ux)
Chain Length:110
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Primary Citation
Mitoribosomal small subunit biogenesis in trypanosomes involves an extensive assembly machinery.
Science 365 1144 1149 (2019)
PMID: 31515389 DOI: 10.1126/science.aaw5570

Abstact

Mitochondrial ribosomes (mitoribosomes) are large ribonucleoprotein complexes that synthesize proteins encoded by the mitochondrial genome. An extensive cellular machinery responsible for ribosome assembly has been described only for eukaryotic cytosolic ribosomes. Here we report that the assembly of the small mitoribosomal subunit in Trypanosoma brucei involves a large number of factors and proceeds through the formation of assembly intermediates, which we analyzed by using cryo-electron microscopy. One of them is a 4-megadalton complex, referred to as the small subunit assemblosome, in which we identified 34 factors that interact with immature ribosomal RNA (rRNA) and recognize its functionally important regions. The assembly proceeds through large-scale conformational changes in rRNA coupled with successive incorporation of mitoribosomal proteins, providing an example for the complexity of the ribosomal assembly process in mitochondria.

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Protein

Chemical

Disease

Primary Citation of related structures