6SGA image
Entry Detail
PDB ID:
6SGA
EMDB ID:
Keywords:
Title:
Body domain of the mt-SSU assemblosome from Trypanosoma brucei
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2019-08-03
Release Date:
2019-09-18
Method Details:
Experimental Method:
Resolution:
3.10 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polyribonucleotide
Description:9S rRNA
Chain IDs:RB (auth: CA)
Chain Length:602
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:uS5m
Chain IDs:A (auth: CE)
Chain Length:435
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:bS6m
Chain IDs:B (auth: CF)
Chain Length:160
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:uS8m
Chain IDs:C (auth: CH)
Chain Length:282
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:uS11m
Chain IDs:D (auth: CK)
Chain Length:326
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:uS15m
Chain IDs:E (auth: CO)
Chain Length:429
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:bS16m
Chain IDs:F (auth: CP)
Chain Length:188
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:uS17m
Chain IDs:G (auth: CQ)
Chain Length:336
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:bS18m
Chain IDs:H (auth: CR)
Chain Length:320
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:mS22
Chain IDs:I (auth: Ca)
Chain Length:602
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:mS23
Chain IDs:J (auth: Cb)
Chain Length:311
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:mS26
Chain IDs:K (auth: Cd)
Chain Length:440
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:mS34
Chain IDs:L (auth: Cj)
Chain Length:257
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:mS38
Chain IDs:M (auth: Cn)
Chain Length:250
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:mS41
Chain IDs:N (auth: Cp)
Chain Length:188
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:mS51 (KRIPP1)
Chain IDs:O (auth: DD)
Chain Length:812
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:mS56
Chain IDs:P (auth: DI)
Chain Length:407
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:mS59
Chain IDs:Q (auth: DL)
Chain Length:307
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:mS62 (KRIPP14)
Chain IDs:R (auth: DO)
Chain Length:282
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:mS63 (KRIPP16)
Chain IDs:S (auth: DP)
Chain Length:274
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:mS65
Chain IDs:T (auth: DR)
Chain Length:270
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:mS68
Chain IDs:U (auth: DU)
Chain Length:228
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:mS73
Chain IDs:V (auth: DZ)
Chain Length:94
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:mt-SAF1 (RSM22)
Chain IDs:SB (auth: F1)
Chain Length:1041
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:mt-SAF2 (KRIPP2)
Chain IDs:W (auth: F2)
Chain Length:1024
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:mt-SAF3
Chain IDs:X (auth: F3)
Chain Length:966
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:mt-SAF5
Chain IDs:Y (auth: F5)
Chain Length:754
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:mt-SAF6
Chain IDs:Z (auth: F6)
Chain Length:676
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:mt-SAF7 (KRIPP10)
Chain IDs:AA (auth: F7)
Chain Length:679
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:mt-SAF8
Chain IDs:BA (auth: F8)
Chain Length:726
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:mt-SAF9
Chain IDs:CA (auth: F9)
Chain Length:608
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:mt-SAF10
Chain IDs:DA (auth: FA)
Chain Length:642
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:mt-SAF11
Chain IDs:EA (auth: FB), FA (auth: FC)
Chain Length:151
Number of Molecules:2
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:mt-SAF13
Chain IDs:GA (auth: FE)
Chain Length:553
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:mt-SAF14
Chain IDs:TB (auth: FF)
Chain Length:474
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:mt-SAF18
Chain IDs:HA (auth: FJ)
Chain Length:362
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:mt-SAF21
Chain IDs:IA (auth: FM), JA (auth: FN)
Chain Length:370
Number of Molecules:2
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:mt-SAF22 (KRIPP17)
Chain IDs:KA (auth: FO)
Chain Length:334
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:mt-SAF23
Chain IDs:LA (auth: FP)
Chain Length:349
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:mt-SAF24
Chain IDs:MA (auth: FQ), NA (auth: FR), OA (auth: FS), PA (auth: FT), QA (auth: FU)
Chain Length:307
Number of Molecules:5
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:mt-SAF26
Chain IDs:RA (auth: FW)
Chain Length:263
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:mt-SAF27
Chain IDs:SA (auth: FX)
Chain Length:239
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:mt-SAF28
Chain IDs:TA (auth: FY)
Chain Length:188
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:mt-SAF29
Chain IDs:UA (auth: FZ)
Chain Length:178
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:mt-SAF30
Chain IDs:VA (auth: Fa)
Chain Length:642
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:mt-SAF31
Chain IDs:WA (auth: Fb)
Chain Length:151
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:mt-SAF32
Chain IDs:XA (auth: Fc)
Chain Length:148
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:mt-SAF33
Chain IDs:YA (auth: Fd)
Chain Length:143
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:UNK-A
Chain IDs:ZA (auth: UA)
Chain Length:21
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:UNK-B
Chain IDs:AB (auth: UB)
Chain Length:27
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:UNK-C
Chain IDs:BB (auth: UC)
Chain Length:10
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:UNK-D, UNK-M, UNK-Q
Chain IDs:CB (auth: UD), KB (auth: UM), OB (auth: UQ)
Chain Length:9
Number of Molecules:3
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:UNK-E, UNK-P
Chain IDs:DB (auth: UE), NB (auth: UP)
Chain Length:45
Number of Molecules:2
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:UNK-F
Chain IDs:EB (auth: UF)
Chain Length:11
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:UNK-G
Chain IDs:FB (auth: UG)
Chain Length:17
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:UNK-H
Chain IDs:GB (auth: UH)
Chain Length:5
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:UNK-I, UNK-M
Chain IDs:HB (auth: UI), LB (auth: UN)
Chain Length:8
Number of Molecules:2
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:UNK-J
Chain IDs:IB (auth: UJ)
Chain Length:16
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:UNK-L
Chain IDs:JB (auth: UL)
Chain Length:22
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:UNK-O
Chain IDs:MB (auth: UO)
Chain Length:30
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:UNK-U
Chain IDs:PB (auth: UU)
Chain Length:24
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:UNK-I
Chain IDs:QB (auth: UY)
Chain Length:468
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Primary Citation
Mitoribosomal small subunit biogenesis in trypanosomes involves an extensive assembly machinery.
Science 365 1144 1149 (2019)
PMID: 31515389 DOI: 10.1126/science.aaw5570

Abstact

Mitochondrial ribosomes (mitoribosomes) are large ribonucleoprotein complexes that synthesize proteins encoded by the mitochondrial genome. An extensive cellular machinery responsible for ribosome assembly has been described only for eukaryotic cytosolic ribosomes. Here we report that the assembly of the small mitoribosomal subunit in Trypanosoma brucei involves a large number of factors and proceeds through the formation of assembly intermediates, which we analyzed by using cryo-electron microscopy. One of them is a 4-megadalton complex, referred to as the small subunit assemblosome, in which we identified 34 factors that interact with immature ribosomal RNA (rRNA) and recognize its functionally important regions. The assembly proceeds through large-scale conformational changes in rRNA coupled with successive incorporation of mitoribosomal proteins, providing an example for the complexity of the ribosomal assembly process in mitochondria.

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Primary Citation of related structures