6SDU image
Deposition Date 2019-07-29
Release Date 2020-07-08
Last Version Date 2024-05-15
Entry Detail
PDB ID:
6SDU
Keywords:
Title:
Xyloglucanase domain of NopAA, a type three effector from Sinorhizobium fredii in complex with cellobiose
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Type III effector NopAA
Gene (Uniprot):nopAA
Chain IDs:A, B, C, D
Chain Length:237
Number of Molecules:4
Biological Source:Sinorhizobium fredii USDA 257
Ligand Molecules
Peptide-like Molecules
PRD_900005
Primary Citation
Structural and enzymatic characterisation of the Type III effector NopAA (=GunA) from Sinorhizobium fredii USDA257 reveals a Xyloglucan hydrolase activity.
Sci Rep 10 9932 9932 (2020)
PMID: 32555346 DOI: 10.1038/s41598-020-67069-4

Abstact

Rhizobia are nitrogen-fixing soil bacteria that can infect legume plants to establish root nodules symbiosis. To do that, a complex exchange of molecular signals occurs between plants and bacteria. Among them, rhizobial Nops (Nodulation outer proteins), secreted by a type III secretion system (T3SS) determine the host-specificity for efficient symbiosis with plant roots. Little is known about the molecular function of secreted Nops (also called effectors (T3E)) and their role in the symbiosis process. We performed the structure-function characterization of NopAA, a T3E from Sinorhizobium fredii by using a combination of X-ray crystallography, biochemical and biophysical approaches. This work displays for the first time a complete structural and biochemical characterization of a symbiotic T3E. Our results showed that NopAA has a catalytic domain with xyloglucanase activity extended by a N-terminal unfolded secretion domain that allows its secretion. We proposed that these original structural properties combined with the specificity of NopAA toward xyloglucan, a key component of root cell wall which is also secreted by roots in the soil, can give NopAA a strategic position to participate in recognition between bacteria and plant roots and to intervene in nodulation process.

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Primary Citation of related structures