6SDK image
Entry Detail
PDB ID:
6SDK
Title:
Crystal structure of bacterial ParB dimer bound to CDP
Biological Source:
PDB Version:
Deposition Date:
2019-07-28
Release Date:
2019-10-23
Method Details:
Experimental Method:
Resolution:
1.81 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Stage 0 sporulation protein J
Chain IDs:A, B, C, D
Chain Length:199
Number of Molecules:4
Biological Source:Bacillus subtilis (strain 168)
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET modified residue
Primary Citation
Self-organization ofparScentromeres by the ParB CTP hydrolase.
Science 366 1129 1133 (2019)
PMID: 31649139 DOI: 10.1126/science.aay3965

Abstact

ParABS systems facilitate chromosome segregation and plasmid partitioning in bacteria and archaea. ParB protein binds centromeric parS DNA sequences and spreads to flanking DNA. We show that ParB is an enzyme that hydrolyzes cytidine triphosphate (CTP) to cytidine diphosphate (CDP). parS DNA stimulates cooperative CTP binding by ParB and CTP hydrolysis. A nucleotide cocrystal structure elucidates the catalytic center of the dimerization-dependent ParB CTPase. Single-molecule imaging and biochemical assays recapitulate features of ParB spreading from parS in the presence but not absence of CTP. These findings suggest that centromeres assemble by self-loading of ParB DNA sliding clamps at parS ParB CTPase is not related to known nucleotide hydrolases and might be a promising target for developing new classes of antibiotics.

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Primary Citation of related structures