6SDK image
Deposition Date 2019-07-28
Release Date 2019-10-23
Last Version Date 2024-11-06
Entry Detail
PDB ID:
6SDK
Title:
Crystal structure of bacterial ParB dimer bound to CDP
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.81 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Stage 0 sporulation protein J
Gene (Uniprot):spo0J
Chain IDs:A, B, C, D
Chain Length:199
Number of Molecules:4
Biological Source:Bacillus subtilis (strain 168)
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET modified residue
Primary Citation
Self-organization ofparScentromeres by the ParB CTP hydrolase.
Science 366 1129 1133 (2019)
PMID: 31649139 DOI: 10.1126/science.aay3965

Abstact

ParABS systems facilitate chromosome segregation and plasmid partitioning in bacteria and archaea. ParB protein binds centromeric parS DNA sequences and spreads to flanking DNA. We show that ParB is an enzyme that hydrolyzes cytidine triphosphate (CTP) to cytidine diphosphate (CDP). parS DNA stimulates cooperative CTP binding by ParB and CTP hydrolysis. A nucleotide cocrystal structure elucidates the catalytic center of the dimerization-dependent ParB CTPase. Single-molecule imaging and biochemical assays recapitulate features of ParB spreading from parS in the presence but not absence of CTP. These findings suggest that centromeres assemble by self-loading of ParB DNA sliding clamps at parS ParB CTPase is not related to known nucleotide hydrolases and might be a promising target for developing new classes of antibiotics.

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Primary Citation of related structures
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