6SB3 image
Entry Detail
PDB ID:
6SB3
EMDB ID:
Keywords:
Title:
CryoEM structure of murine perforin-2 ectodomain in a pre-pore form
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2019-07-18
Release Date:
2020-02-05
Method Details:
Experimental Method:
Resolution:
3.50 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Macrophage-expressed gene 1 protein
Chain IDs:A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
Chain Length:646
Number of Molecules:16
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
Structure and mechanism of bactericidal mammalian perforin-2, an ancient agent of innate immunity.
Sci Adv 6 eaax8286 eaax8286 (2020)
PMID: 32064340 DOI: 10.1126/sciadv.aax8286

Abstact

Perforin-2 (MPEG1) is thought to enable the killing of invading microbes engulfed by macrophages and other phagocytes, forming pores in their membranes. Loss of perforin-2 renders individual phagocytes and whole organisms significantly more susceptible to bacterial pathogens. Here, we reveal the mechanism of perforin-2 activation and activity using atomic structures of pre-pore and pore assemblies, high-speed atomic force microscopy, and functional assays. Perforin-2 forms a pre-pore assembly in which its pore-forming domain points in the opposite direction to its membrane-targeting domain. Acidification then triggers pore formation, via a 180° conformational change. This novel and unexpected mechanism prevents premature bactericidal attack and may have played a key role in the evolution of all perforin family proteins.

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Primary Citation of related structures