6SAG image
Deposition Date 2019-07-16
Release Date 2019-09-18
Last Version Date 2024-10-23
Entry Detail
PDB ID:
6SAG
Keywords:
Title:
Cryo-EM structure of TMV with Ca2+ at low pH
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.00 Å
Aggregation State:
HELICAL ARRAY
Reconstruction Method:
HELICAL
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Capsid protein
Gene (Uniprot):CP
Chain IDs:A
Chain Length:159
Number of Molecules:1
Biological Source:Tobacco mosaic virus (strain vulgare)
Polymer Type:polyribonucleotide
Molecule:RNA (5'-R(P*GP*AP*A)-3')
Chain IDs:B (auth: R)
Chain Length:3
Number of Molecules:1
Biological Source:Tobacco mosaic virus (vulgare)
Primary Citation
Elucidation of the viral disassembly switch of tobacco mosaic virus.
Embo Rep. 20 e48451 e48451 (2019)
PMID: 31535454 DOI: 10.15252/embr.201948451

Abstact

Stable capsid structures of viruses protect viral RNA while they also require controlled disassembly for releasing the viral genome in the host cell. A detailed understanding of viral disassembly processes and the involved structural switches is still lacking. This process has been extensively studied using tobacco mosaic virus (TMV), and carboxylate interactions are assumed to play a critical part in this process. Here, we present two cryo-EM structures of the helical TMV assembly at 2.0 and 1.9 Å resolution in conditions of high Ca2+ concentration at low pH and in water. Based on our atomic models, we identify the conformational details of the disassembly switch mechanism: In high Ca2+ /acidic pH environment, the virion is stabilized between neighboring subunits through carboxyl groups E95 and E97 in close proximity to a Ca2+ binding site that is shared between two subunits. Upon increase in pH and lower Ca2+ levels, mutual repulsion of the E95/E97 pair and Ca2+ removal destabilize the network of interactions between adjacent subunits at lower radius and release the switch for viral disassembly.

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