6S9U image
Entry Detail
PDB ID:
6S9U
Keywords:
Title:
Crystal structure of sucrose 6F-phosphate phosphorylase from Ilumatobacter coccineus
Biological Source:
PDB Version:
Deposition Date:
2019-07-15
Release Date:
2019-08-28
Method Details:
Experimental Method:
Resolution:
2.05 Å
R-Value Free:
0.19
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Putative sucrose phosphorylase
Chain IDs:A
Chain Length:531
Number of Molecules:1
Biological Source:Ilumatobacter coccineus YM16-304
Primary Citation
Structural Comparison of a Promiscuous and a Highly Specific Sucrose 6 F -Phosphate Phosphorylase.
Int J Mol Sci 20 ? ? (2019)
PMID: 31405215 DOI: 10.3390/ijms20163906

Abstact

In family GH13 of the carbohydrate-active enzyme database, subfamily 18 contains glycoside phosphorylases that act on α-sugars and glucosides. Because their phosphorolysis reactions are effectively reversible, these enzymes are of interest for the biocatalytic synthesis of various glycosidic compounds. Sucrose 6F-phosphate phosphorylases (SPPs) constitute one of the known substrate specificities. Here, we report the characterization of an SPP from Ilumatobacter coccineus with a far stricter specificity than the previously described promiscuous SPP from Thermoanaerobacterium thermosaccharolyticum. Crystal structures of both SPPs were determined to provide insight into their similarities and differences. The residues responsible for binding the fructose 6-phosphate group in subsite +1 were found to differ considerably between the two enzymes. Furthermore, several variants that introduce a higher degree of substrate promiscuity in the strict SPP from I. coccineus were designed. These results contribute to an expanded structural knowledge of enzymes in subfamily GH13_18 and facilitate their rational engineering.

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