6S9F image
Entry Detail
PDB ID:
6S9F
Title:
Drosophila OTK, extracellular domains 3-5
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2019-07-12
Release Date:
2020-03-25
Method Details:
Experimental Method:
Resolution:
1.97 Å
R-Value Free:
0.23
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Tyrosine-protein kinase-like otk
Chain IDs:A, B
Chain Length:569
Number of Molecules:2
Biological Source:Drosophila melanogaster
Primary Citation
Drosophila OTK Is a Glycosaminoglycan-Binding Protein with High Conformational Flexibility.
Structure 28 507 515.e5 (2020)
PMID: 32187531 DOI: 10.1016/j.str.2020.02.008

Abstact

The transmembrane protein OTK plays an essential role in plexin and Wnt signaling during Drosophila development. We have determined a crystal structure of the last three domains of the OTK ectodomain and found that OTK shows high conformational flexibility resulting from mobility at the interdomain interfaces. We failed to detect direct binding between Drosophila Plexin A (PlexA) and OTK, which was suggested previously. We found that, instead of PlexA, OTK directly binds semaphorin 1a. Our binding analyses further revealed that glycosaminoglycans, heparin and heparan sulfate, are ligands for OTK and thus may play a role in the Sema1a-PlexA axon guidance system.

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