6S99 image
Deposition Date 2019-07-11
Release Date 2020-08-26
Last Version Date 2022-12-07
Entry Detail
PDB ID:
6S99
Title:
Dimethylated fusion protein of RSL and trimeric coiled coil in complex with cucurbit[7]uril
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.65 Å
R-Value Free:
0.25
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:4dzn-RSL,Fucose-binding lectin protein,Fucose-binding lectin protein
Gene (Uniprot):E7Z57_08365, HF909_06975, LBW55_09125, LBW59_25430, RUN39_v1_50103
Chain IDs:A, B, C, D, E, F
Chain Length:114
Number of Molecules:6
Biological Source:Ralstonia solanacearum
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MLY A LYS modified residue
Primary Citation
Segregated Protein-Cucurbit[7]uril Crystalline Architectures via Modulatory Peptide Tectons.
Chemistry ? ? ? (2021)
PMID: 34432924 DOI: 10.1002/chem.202103025

Abstact

One approach to protein assembly involves water-soluble supramolecular receptors that act like glues. Bionanoarchitectures directed by these scaffolds are often system-specific, with few studies investigating their customization. Herein, the modulation of cucurbituril-mediated protein assemblies through the inclusion of peptide tectons is described. Three peptides of varying length and structural order were N-terminally appended to RSL, a β-propeller building block. Each fusion protein was incorporated into crystalline architectures mediated by cucurbit[7]uril (Q7). A trimeric coiled-coil served as a spacer within a Q7-directed sheet assembly of RSL, giving rise to a layered material of varying porosity. Within the spacer layers, the coiled-coils were dynamic. This result prompted consideration of intrinsically disordered peptides (IDPs) as modulatory tectons. Similar to the coiled-coil, a mussel adhesion peptide (Mefp) also acted as a spacer between protein-Q7 sheets. In contrast, the fusion of a nucleoporin peptide (Nup) to RSL did not recapitulate the sheet assembly. Instead, a Q7-directed cage was adopted, within which disordered Nup peptides were partially "captured" by Q7 receptors. IDP capture occurred by macrocycle recognition of an intrapeptide Phe-Gly motif in which the benzyl group was encapsulated by Q7. The modularity of these protein-cucurbituril architectures adds a new dimension to macrocycle-mediated protein assembly. Segregated protein crystals, with alternating layers of high and low porosity, could provide a basis for new types of materials.

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Primary Citation of related structures