6S8S image
Deposition Date 2019-07-10
Release Date 2019-09-04
Last Version Date 2024-01-24
Entry Detail
PDB ID:
6S8S
Title:
Extended structure of the human DDX6 C-terminal domain in complex with an EDC3 FDF peptide
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.21 Å
R-Value Free:
0.22
R-Value Work:
0.17
R-Value Observed:
0.18
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Probable ATP-dependent RNA helicase DDX6
Gene (Uniprot):DDX6
Chain IDs:A, C
Chain Length:193
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Enhancer of mRNA-decapping protein 3
Gene (Uniprot):EDC3
Chain IDs:B, D
Chain Length:44
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Molecular basis for GIGYF-Me31B complex assembly in 4EHP-mediated translational repression.
Genes Dev. 33 1355 1360 (2019)
PMID: 31439631 DOI: 10.1101/gad.329219.119

Abstact

GIGYF (Grb10-interacting GYF [glycine-tyrosine-phenylalanine domain]) proteins coordinate with 4EHP (eIF4E [eukaryotic initiation factor 4E] homologous protein), the DEAD (Asp-Glu-Ala-Asp)-box helicase Me31B/DDX6, and mRNA-binding proteins to elicit transcript-specific repression. However, the underlying molecular mechanism remains unclear. Here, we report that GIGYF contains a motif necessary and sufficient for direct interaction with Me31B/DDX6. A 2.4 Å crystal structure of the GIGYF-Me31B complex reveals that this motif arranges into a coil connected to a β hairpin on binding to conserved hydrophobic patches on the Me31B RecA2 domain. Structure-guided mutants indicate that 4EHP-GIGYF-DDX6 complex assembly is required for tristetraprolin-mediated down-regulation of an AU-rich mRNA, thus revealing the molecular principles of translational repression.

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Primary Citation of related structures