6S8R image
Deposition Date 2019-07-10
Release Date 2019-09-04
Last Version Date 2024-10-23
Entry Detail
PDB ID:
6S8R
Title:
D. melanogaster RNA helicase Me31B in complex with GIGYF
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.41 Å
R-Value Free:
0.26
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:ATP-dependent RNA helicase me31b
Gene (Uniprot):me31B
Chain IDs:A
Chain Length:172
Number of Molecules:1
Biological Source:Drosophila melanogaster
Polymer Type:polypeptide(L)
Molecule:GIGYF family protein CG11148
Gene (Uniprot):Gyf
Chain IDs:B
Chain Length:27
Number of Molecules:1
Biological Source:Drosophila melanogaster
Ligand Molecules
Primary Citation
Molecular basis for GIGYF-Me31B complex assembly in 4EHP-mediated translational repression.
Genes Dev. 33 1355 1360 (2019)
PMID: 31439631 DOI: 10.1101/gad.329219.119

Abstact

GIGYF (Grb10-interacting GYF [glycine-tyrosine-phenylalanine domain]) proteins coordinate with 4EHP (eIF4E [eukaryotic initiation factor 4E] homologous protein), the DEAD (Asp-Glu-Ala-Asp)-box helicase Me31B/DDX6, and mRNA-binding proteins to elicit transcript-specific repression. However, the underlying molecular mechanism remains unclear. Here, we report that GIGYF contains a motif necessary and sufficient for direct interaction with Me31B/DDX6. A 2.4 Å crystal structure of the GIGYF-Me31B complex reveals that this motif arranges into a coil connected to a β hairpin on binding to conserved hydrophobic patches on the Me31B RecA2 domain. Structure-guided mutants indicate that 4EHP-GIGYF-DDX6 complex assembly is required for tristetraprolin-mediated down-regulation of an AU-rich mRNA, thus revealing the molecular principles of translational repression.

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Primary Citation of related structures