6S8M image
Deposition Date 2019-07-10
Release Date 2019-08-21
Last Version Date 2025-10-01
Entry Detail
PDB ID:
6S8M
Keywords:
Title:
S. pombe microtubule decorated with Cut7 motor domain in the AMPPNP state
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
4.50 Å
Aggregation State:
FILAMENT
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Tubulin alpha-1 chain
Gene (Uniprot):nda2
Chain IDs:C (auth: A)
Chain Length:455
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Tubulin beta chain
Gene (Uniprot):nda3
Chain IDs:B
Chain Length:448
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Kinesin-like protein cut7
Gene (Uniprot):cut7
Chain IDs:A (auth: K)
Chain Length:438
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe
Primary Citation
Cryo-EM Structure (4.5- angstrom ) of Yeast Kinesin-5-Microtubule Complex Reveals a Distinct Binding Footprint and Mechanism of Drug Resistance.
J.Mol.Biol. 431 864 872 (2019)
PMID: 30659798 DOI: 10.1016/j.jmb.2019.01.011

Abstact

Kinesin-5s are microtubule-dependent motors that drive spindle pole separation during mitosis. We used cryo-electron microscopy to determine the 4.5-Å resolution structure of the motor domain of the fission yeast kinesin-5 Cut7 bound to fission yeast microtubules and explored the topology of the motor-microtubule interface and the susceptibility of the complex to drug binding. Despite their non-canonical architecture and mechanochemistry, Schizosaccharomyces pombe microtubules were stabilized by epothilone at the taxane binding pocket. The overall Cut7 footprint on the S. pombe microtubule surface is altered compared to mammalian tubulin microtubules because of their different polymer architectures. However, the core motor-microtubule interaction is tightly conserved, reflected in similar Cut7 ATPase activities on each microtubule type. AMPPNP-bound Cut7 adopts a kinesin-conserved ATP-like conformation including cover neck bundle formation. However, the Cut7 ATPase is not blocked by a mammalian-specific kinesin-5 inhibitor, consistent with the non-conserved sequence and structure of its loop5 insertion.

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