6S53 image
Entry Detail
PDB ID:
6S53
Keywords:
Title:
Crystal structure of TRIM21 RING domain in complex with an isopeptide-linked Ube2N~ubiquitin conjugate
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2019-06-30
Release Date:
2019-09-11
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.24
R-Value Work:
0.20
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:E3 ubiquitin-protein ligase TRIM21
Chain IDs:E (auth: B), F (auth: A), K (auth: H), L (auth: G)
Chain Length:85
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Ubiquitin-conjugating enzyme E2 N
Chain IDs:A (auth: E), C, G (auth: K), I
Chain Length:152
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Polyubiquitin-C
Chain IDs:B (auth: F), D, H (auth: L), J
Chain Length:76
Number of Molecules:4
Biological Source:Homo sapiens
Primary Citation
A tri-ionic anchor mechanism drives Ube2N-specific recruitment and K63-chain ubiquitination in TRIM ligases.
Nat Commun 10 4502 4502 (2019)
PMID: 31582740 DOI: 10.1038/s41467-019-12388-y

Abstact

The cytosolic antibody receptor TRIM21 possesses unique ubiquitination activity that drives broad-spectrum anti-pathogen targeting and underpins the protein depletion technology Trim-Away. This activity is dependent on formation of self-anchored, K63-linked ubiquitin chains by the heterodimeric E2 enzyme Ube2N/Ube2V2. Here we reveal how TRIM21 facilitates ubiquitin transfer and differentiates this E2 from other closely related enzymes. A tri-ionic motif provides optimally distributed anchor points that allow TRIM21 to wrap an Ube2N~Ub complex around its RING domain, locking the closed conformation and promoting ubiquitin discharge. Mutation of these anchor points inhibits ubiquitination with Ube2N/Ube2V2, viral neutralization and immune signalling. We show that the same mechanism is employed by the anti-HIV restriction factor TRIM5 and identify spatially conserved ionic anchor points in other Ube2N-recruiting RING E3s. The tri-ionic motif is exclusively required for Ube2N but not Ube2D1 activity and provides a generic E2-specific catalysis mechanism for RING E3s.

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