6S2Y image
Deposition Date 2019-06-23
Release Date 2019-12-18
Last Version Date 2024-11-06
Entry Detail
PDB ID:
6S2Y
Keywords:
Title:
Water-soluble Chlorophyll Protein (WSCP) from Lepidium virginicum with Chlorophyll-b
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.27
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Water-soluble chlorophyll protein
Gene (Uniprot):WSCP1
Chain IDs:A, B, C, D
Chain Length:180
Number of Molecules:4
Biological Source:Lepidium virginicum
Ligand Molecules
Primary Citation
How water-mediated hydrogen bonds affect chlorophyll a/b selectivity in Water-Soluble Chlorophyll Protein.
Sci Rep 9 18255 18255 (2019)
PMID: 31796824 DOI: 10.1038/s41598-019-54520-4

Abstact

The Water-Soluble Chlorophyll Protein (WSCP) of Brassicaceae is a remarkably stable tetrapyrrole-binding protein that, by virtue of its simple design, is an exceptional model to investigate the interactions taking place between pigments and their protein scaffold and how they affect the photophysical properties and the functionality of the complexes. We investigated variants of WSCP from Lepidium virginicum (Lv) and Brassica oleracea (Bo), reconstituted with Chlorophyll (Chl) b, to determine the mechanisms by which the different Chl binding sites control their Chl a/b specificities. A combined Raman and crystallographic investigation has been employed, aimed to characterize in detail the hydrogen-bond network involving the formyl group of Chl b. The study revealed a variable degree of conformational freedom of the hydrogen bond networks among the WSCP variants, and an unexpected mixed presence of hydrogen-bonded and not hydrogen-bonded Chls b in the case of the L91P mutant of Lv WSCP. These findings helped to refine the description of the mechanisms underlying the different Chl a/b specificities of WSCP versions, highlighting the importance of the structural rigidity of the Chl binding site in the vicinity of the Chl b formyl group in granting a strong selectivity to binding sites.

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Primary Citation of related structures