6S2P image
Deposition Date 2019-06-21
Release Date 2019-07-03
Last Version Date 2024-05-15
Entry Detail
PDB ID:
6S2P
Keywords:
Title:
Structure of the NB-ARC domain from the Tomato immune receptor NRC1
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.33
R-Value Work:
0.30
R-Value Observed:
0.30
Space Group:
P 64
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:NRC1
Chain IDs:A (auth: N)
Chain Length:347
Number of Molecules:1
Biological Source:Solanum lycopersicum
Ligand Molecules
Primary Citation
Structural and biochemical studies of an NB-ARC domain from a plant NLR immune receptor.
Plos One 14 e0221226 e0221226 (2019)
PMID: 31461469 DOI: 10.1371/journal.pone.0221226

Abstact

Plant NLRs are modular immune receptors that trigger rapid cell death in response to attempted infection by pathogens. A highly conserved nucleotide-binding domain shared with APAF-1, various R-proteins and CED-4 (NB-ARC domain) is proposed to act as a molecular switch, cycling between ADP (repressed) and ATP (active) bound forms. Studies of plant NLR NB-ARC domains have revealed functional similarities to mammalian homologues, and provided insight into potential mechanisms of regulation. However, further advances have been limited by difficulties in obtaining sufficient yields of protein suitable for structural and biochemical techniques. From protein expression screens in Escherichia coli and Sf9 insect cells, we defined suitable conditions to produce the NB-ARC domain from the tomato NLR NRC1. Biophysical analyses of this domain showed it is a folded, soluble protein. Structural studies revealed the NRC1 NB-ARC domain had co-purified with ADP, and confirmed predicted structural similarities between plant NLR NB-ARC domains and their mammalian homologues.

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