6S24 image
Entry Detail
PDB ID:
6S24
Keywords:
Title:
Crystal structure of the TgGalNAc-T3 in complex with UDP, manganese and the peptide 3
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2019-06-20
Release Date:
2019-12-25
Method Details:
Experimental Method:
Resolution:
2.12 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Polypeptide N-acetylgalactosaminyltransferase
Chain IDs:A
Chain Length:631
Number of Molecules:1
Biological Source:Taeniopygia guttata
Polymer Type:polypeptide(L)
Description:ALA-THR-GLY-ALA-GLY-ALA-GLY-ALA-GLY-THR-THR-PRO-GLY-PRO
Chain IDs:B (auth: F)
Chain Length:14
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Molecular basis for fibroblast growth factor 23 O-glycosylation by GalNAc-T3.
Nat.Chem.Biol. 16 351 360 (2020)
PMID: 31932717 DOI: 10.1038/s41589-019-0444-x

Abstact

Polypeptide GalNAc-transferase T3 (GalNAc-T3) regulates fibroblast growth factor 23 (FGF23) by O-glycosylating Thr178 in a furin proprotein processing motif RHT178R↓S. FGF23 regulates phosphate homeostasis and deficiency in GALNT3 or FGF23 results in hyperphosphatemia and familial tumoral calcinosis. We explored the molecular mechanism for GalNAc-T3 glycosylation of FGF23 using engineered cell models and biophysical studies including kinetics, molecular dynamics and X-ray crystallography of GalNAc-T3 complexed to glycopeptide substrates. GalNAc-T3 uses a lectin domain mediated mechanism to glycosylate Thr178 requiring previous glycosylation at Thr171. Notably, Thr178 is a poor substrate site with limiting glycosylation due to substrate clashes leading to destabilization of the catalytic domain flexible loop. We suggest GalNAc-T3 specificity for FGF23 and its ability to control circulating levels of intact FGF23 is achieved by FGF23 being a poor substrate. GalNAc-T3's structure further reveals the molecular bases for reported disease-causing mutations. Our findings provide an insight into how GalNAc-T isoenzymes achieve isoenzyme-specific nonredundant functions.

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Primary Citation of related structures