6RZD image
Entry Detail
PDB ID:
6RZD
Keywords:
Title:
Crystal structure of an inverting family GH156 exosialidase from uncultured bacterium pG7
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2019-06-13
Release Date:
2019-11-06
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.28
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:exosialidase from uncultured bacterium pG7
Chain IDs:A, B
Chain Length:511
Number of Molecules:2
Biological Source:uncultured bacterium pG7
Primary Citation
Inverting family GH156 sialidases define an unusual catalytic motif for glycosidase action.
Nat Commun 10 4816 4816 (2019)
PMID: 31645552 DOI: 10.1038/s41467-019-12684-7

Abstact

Sialic acids are a family of related sugars that play essential roles in many biological events intimately linked to cellular recognition in both health and disease. Sialidases are therefore orchestrators of cellular biology and important therapeutic targets for viral infection. Here, we sought to define if uncharacterized sialidases would provide distinct paradigms in sialic acid biochemistry. We show that a recently discovered sialidase family, whose first member EnvSia156 was isolated from hot spring metagenomes, defines an unusual structural fold and active centre constellation, not previously described in sialidases. Consistent with an inverting mechanism, EnvSia156 reveals a His/Asp active center in which the His acts as a Brønsted acid and Asp as a Brønsted base in a single-displacement mechanism. A predominantly hydrophobic aglycone site facilitates accommodation of a variety of 2-linked sialosides; a versatility that offers the potential for glycan hydrolysis across a range of biological and technological platforms.

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