6RU8 image
Deposition Date 2019-05-27
Release Date 2020-05-13
Last Version Date 2024-10-23
Entry Detail
PDB ID:
6RU8
Keywords:
Title:
Crystal structure of Casein Kinase I delta (CK1d) in complex with triple phosphorylated p63 PAD3P peptide
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
1.92 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Casein kinase I isoform delta
Gene (Uniprot):CSNK1D
Chain IDs:A, B, C, D
Chain Length:296
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Tumor protein 63
Gene (Uniprot):TP63
Chain IDs:E, F, G, H
Chain Length:12
Number of Molecules:4
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
SEP E SER modified residue
Primary Citation
p63 uses a switch-like mechanism to set the threshold for induction of apoptosis.
Nat.Chem.Biol. 16 1078 1086 (2020)
PMID: 32719556 DOI: 10.1038/s41589-020-0600-3

Abstact

The p53 homolog TAp63α is the transcriptional key regulator of genome integrity in oocytes. After DNA damage, TAp63α is activated by multistep phosphorylation involving multiple phosphorylation events by the kinase CK1, which triggers the transition from a dimeric and inactive conformation to an open and active tetramer that initiates apoptosis. By measuring activation kinetics in ovaries and single-site phosphorylation kinetics in vitro with peptides and full-length protein, we show that TAp63α phosphorylation follows a biphasic behavior. Although the first two CK1 phosphorylation events are fast, the third one, which constitutes the decisive step to form the active conformation, is slow. Structure determination of CK1 in complex with differently phosphorylated peptides reveals the structural mechanism for the difference in the kinetic behavior based on an unusual CK1/TAp63α substrate interaction in which the product of one phosphorylation step acts as an inhibitor for the following one.

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Primary Citation of related structures