6RQJ image
Deposition Date 2019-05-15
Release Date 2020-01-08
Last Version Date 2024-11-06
Entry Detail
PDB ID:
6RQJ
Title:
Structure of human complement C5 complexed with tick inhibitors OmCI, RaCI1 and CirpT1
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.50 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Complement C5
Gene (Uniprot):C5
Chain IDs:A
Chain Length:999
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Complement C5
Gene (Uniprot):C5
Chain IDs:D (auth: B)
Chain Length:655
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Complement inhibitor
Chain IDs:B (auth: C)
Chain Length:165
Number of Molecules:1
Biological Source:Rhipicephalus pulchellus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Rhipicephalus appendiculatus RaCI1
Chain IDs:C (auth: D)
Chain Length:81
Number of Molecules:1
Biological Source:Rhipicephalus pulchellus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative 8.9 kDa family member
Chain IDs:E
Chain Length:112
Number of Molecules:1
Biological Source:Rhipicephalus pulchellus
Ligand Molecules
Primary Citation
An inhibitor of complement C5 provides structural insights into activation.
Proc.Natl.Acad.Sci.USA 117 362 370 (2020)
PMID: 31871188 DOI: 10.1073/pnas.1909973116

Abstact

The complement system is a crucial part of innate immune defenses against invading pathogens. The blood-meal of the tick Rhipicephalus pulchellus lasts for days, and the tick must therefore rely on inhibitors to counter complement activation. We have identified a class of inhibitors from tick saliva, the CirpT family, and generated detailed structural data revealing their mechanism of action. We show direct binding of a CirpT to complement C5 and have determined the structure of the C5-CirpT complex by cryoelectron microscopy. This reveals an interaction with the peripheral macro globulin domain 4 (C5_MG4) of C5. To achieve higher resolution detail, the structure of the C5_MG4-CirpT complex was solved by X-ray crystallography (at 2.7 Å). We thus present the fold of the CirpT protein family, and provide detailed mechanistic insights into its inhibitory function. Analysis of the binding interface reveals a mechanism of C5 inhibition, and provides information to expand our biological understanding of the activation of C5, and thus the terminal complement pathway.

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Primary Citation of related structures