6RQC image
Deposition Date 2019-05-15
Release Date 2019-11-20
Last Version Date 2024-05-22
Entry Detail
PDB ID:
6RQC
Keywords:
Title:
Cryo-EM structure of an MCM loading intermediate
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
4.40 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:DNA replication licensing factor MCM2
Gene (Uniprot):MCM2
Chain IDs:G (auth: 2)
Chain Length:868
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae S288c
Polymer Type:polypeptide(L)
Molecule:DNA replication licensing factor MCM3
Gene (Uniprot):MCM3
Chain IDs:H (auth: 3)
Chain Length:1006
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae S288c
Polymer Type:polypeptide(L)
Molecule:DNA replication licensing factor MCM4
Gene (Uniprot):MCM4
Chain IDs:I (auth: 4)
Chain Length:933
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae S288c
Polymer Type:polypeptide(L)
Molecule:Minichromosome maintenance protein 5
Gene (Uniprot):MCM5
Chain IDs:J (auth: 5)
Chain Length:775
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae S288c
Polymer Type:polypeptide(L)
Molecule:DNA replication licensing factor MCM6
Gene (Uniprot):MCM6
Chain IDs:K (auth: 6)
Chain Length:1017
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae S288c
Polymer Type:polypeptide(L)
Molecule:DNA replication licensing factor MCM7
Gene (Uniprot):MCM7
Chain IDs:L (auth: 7)
Chain Length:845
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae S288c
Polymer Type:polypeptide(L)
Molecule:Origin recognition complex subunit 1
Gene (Uniprot):ORC1
Chain IDs:A
Chain Length:949
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae S288c
Polymer Type:polypeptide(L)
Molecule:Origin recognition complex subunit 2
Gene (Uniprot):ORC2
Chain IDs:B
Chain Length:620
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae S288c
Polymer Type:polypeptide(L)
Molecule:Origin recognition complex subunit 3
Gene (Uniprot):ORC3
Chain IDs:C
Chain Length:616
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae S288c
Polymer Type:polypeptide(L)
Molecule:Origin recognition complex subunit 4
Gene (Uniprot):ORC4
Chain IDs:D
Chain Length:529
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae S288c
Polymer Type:polypeptide(L)
Molecule:Origin recognition complex subunit 5
Gene (Uniprot):ORC5
Chain IDs:E
Chain Length:479
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae S288c
Polymer Type:polypeptide(L)
Molecule:Origin recognition complex subunit 6
Gene (Uniprot):ORC6
Chain IDs:F
Chain Length:435
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae S288c
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (88-MER)
Chain IDs:M (auth: X)
Chain Length:88
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae S288c
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (88-MER)
Chain IDs:N (auth: Y)
Chain Length:88
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae S288c
Primary Citation
Mechanism of head-to-head MCM double-hexamer formation revealed by cryo-EM.
Nature 575 704 710 (2019)
PMID: 31748745 DOI: 10.1038/s41586-019-1768-0

Abstact

In preparation for bidirectional DNA replication, the origin recognition complex (ORC) loads two hexameric MCM helicases to form a head-to-head double hexamer around DNA1,2. The mechanism of MCM double-hexamer formation is debated. Single-molecule experiments have suggested a sequential mechanism, in which the ORC-dependent loading of the first hexamer drives the recruitment of the second hexamer3. By contrast, biochemical data have shown that two rings are loaded independently via the same ORC-mediated mechanism, at two inverted DNA sites4,5. Here we visualize MCM loading using time-resolved electron microscopy, and identify intermediates in the formation of the double hexamer. We confirm that both hexamers are recruited via the same interaction that occurs between ORC and the C-terminal domains of the MCM helicases. Moreover, we identify the mechanism of coupled MCM loading. The loading of the first MCM hexamer around DNA creates a distinct interaction site, which promotes the engagement of ORC at the N-terminal homodimerization interface of MCM. In this configuration, ORC is poised to direct the recruitment of the second hexamer in an inverted orientation, which is suitable for the formation of the double hexamer. Our results therefore reconcile the two apparently contrasting models derived from single-molecule experiments and biochemical data.

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