6RPR image
Deposition Date 2019-05-14
Release Date 2020-03-04
Last Version Date 2024-01-24
Entry Detail
PDB ID:
6RPR
Title:
LEM domain of Emerin mutant T43I in complex with BAF dimer and the Igfold of the lamin A/C
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.26 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Prelamin-A/C
Gene (Uniprot):LMNA
Chain IDs:A (auth: B)
Chain Length:116
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:barrier to autointegration factor (BAF)
Chain IDs:B (auth: D), C (auth: E)
Chain Length:87
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:LEM domain of emerin mutant T43I
Chain IDs:D (auth: G)
Chain Length:43
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
An Emerin LEM-Domain Mutation Impairs Cell Response to Mechanical Stress.
Cells 8 ? ? (2019)
PMID: 31185657 DOI: 10.3390/cells8060570

Abstact

Emerin is a nuclear envelope protein that contributes to genome organization and cell mechanics. Through its N-terminal LAP2-emerin-MAN1 (LEM)-domain, emerin interacts with the DNA-binding protein barrier-to-autointegration (BAF). Emerin also binds to members of the linker of the nucleoskeleton and cytoskeleton (LINC) complex. Mutations in the gene encoding emerin are responsible for the majority of cases of X-linked Emery-Dreifuss muscular dystrophy (X-EDMD). Most of these mutations lead to an absence of emerin. A few missense and short deletion mutations in the disordered region of emerin are also associated with X-EDMD. More recently, missense and short deletion mutations P22L, ∆K37 and T43I were discovered in emerin LEM-domain, associated with isolated atrial cardiac defects (ACD). Here we reveal which defects, at both the molecular and cellular levels, are elicited by these LEM-domain mutations. Whereas K37 mutation impaired the correct folding of the LEM-domain, P22L and T43I had no impact on the 3D structure of emerin. Surprisingly, all three mutants bound to BAF, albeit with a weaker affinity in the case of K37. In human myofibroblasts derived from a patient's fibroblasts, emerin ∆K37 was correctly localized at the inner nuclear membrane, but was present at a significantly lower level, indicating that this mutant is abnormally degraded. Moreover, SUN2 was reduced, and these cells were defective in producing actin stress fibers when grown on a stiff substrate and after cyclic stretches. Altogether, our data suggest that the main effect of mutation K37 is to perturb emerin function within the LINC complex in response to mechanical stress.

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Primary Citation of related structures