6RP5 image
Deposition Date 2019-05-13
Release Date 2019-12-25
Last Version Date 2024-11-06
Entry Detail
PDB ID:
6RP5
Title:
Crystal structure of monocarboxylated hemoglobin from the sub-Antarctic fish Eleginops maclovinus
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.49 Å
R-Value Free:
0.19
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 61 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Hemoglobin subunit alpha 1
Gene (Uniprot):hba1
Chain IDs:A
Chain Length:143
Number of Molecules:1
Biological Source:Eleginops maclovinus
Polymer Type:polypeptide(L)
Molecule:Hemoglobin subunit beta-1
Gene (Uniprot):hbb1
Chain IDs:B
Chain Length:144
Number of Molecules:1
Biological Source:Eleginops maclovinus
Primary Citation
The unique structural features of carbonmonoxy hemoglobin from the sub-Antarctic fish Eleginops maclovinus.
Sci Rep 9 18987 18987 (2019)
PMID: 31831781 DOI: 10.1038/s41598-019-55331-3

Abstact

Tetrameric hemoglobins (Hbs) are prototypical systems for the investigations of fundamental properties of proteins. Although the structure of these proteins has been known for nearly sixty years, there are many aspects related to their function/structure that are still obscure. Here, we report the crystal structure of a carbonmonoxy form of the Hb isolated from the sub-Antarctic notothenioid fish Eleginops maclovinus characterised by either rare or unique features. In particular, the distal site of the α chain results to be very unusual since the distal His is displaced from its canonical position. This displacement is coupled with a shortening of the highly conserved E helix and the formation of novel interactions at tertiary structure level. Interestingly, the quaternary structure is closer to the T-deoxy state of Hbs than to the R-state despite the full coordination of all chains. Notably, these peculiar structural features provide a rationale for some spectroscopic properties exhibited by the protein in solution. Finally, this unexpected structural plasticity of the heme distal side has been associated with specific sequence signatures of various Hbs.

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