6RO0 image
Entry Detail
PDB ID:
6RO0
Keywords:
Title:
CRYSTAL STRUCTURE OF GENETICALLY DETOXIFIED PERTUSSIS TOXIN GDPT.
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2019-05-10
Release Date:
2020-06-03
Method Details:
Experimental Method:
Resolution:
2.13 Å
R-Value Free:
0.26
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Pertussis toxin subunit 1
Mutations:R9K, E129G
Chain IDs:A, G
Chain Length:269
Number of Molecules:2
Biological Source:Bordetella pertussis
Polymer Type:polypeptide(L)
Description:Islet-activating protein S2
Chain IDs:B, H
Chain Length:226
Number of Molecules:2
Biological Source:Bordetella pertussis
Polymer Type:polypeptide(L)
Description:Islet-activating protein S3
Chain IDs:C, I
Chain Length:227
Number of Molecules:2
Biological Source:Bordetella pertussis
Polymer Type:polypeptide(L)
Description:Islet-activating protein S4
Chain IDs:D, E, J, K
Chain Length:152
Number of Molecules:4
Biological Source:Bordetella pertussis
Polymer Type:polypeptide(L)
Description:Pertussis toxin subunit 5
Chain IDs:F, L
Chain Length:133
Number of Molecules:2
Biological Source:Bordetella pertussis
Ligand Molecules
Primary Citation
Genetically detoxified pertussis toxin displays near identical structure to its wild-type and exhibits robust immunogenicity.
Commun Biol 3 427 427 (2020)
PMID: 32759959 DOI: 10.1038/s42003-020-01153-3

Abstact

The mutant gdPT R9K/E129G is a genetically detoxified variant of the pertussis toxin (PTx) and represents an attractive candidate for the development of improved pertussis vaccines. The impact of the mutations on the overall protein structure and its immunogenicity has remained elusive. Here we present the crystal structure of gdPT and show that it is nearly identical to that of PTx. Hydrogen-deuterium exchange mass spectrometry revealed dynamic changes in the catalytic domain that directly impacted NAD+ binding which was confirmed by biolayer interferometry. Distal changes in dynamics were also detected in S2-S5 subunit interactions resulting in tighter packing of B-oligomer corresponding to increased thermal stability. Finally, antigen stimulation of human whole blood, analyzed by a previously unreported mass cytometry assay, indicated broader immunogenicity of gdPT compared to pertussis toxoid. These findings establish a direct link between the conserved structure of gdPT and its ability to generate a robust immune response.

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Primary Citation of related structures