6RNU image
Deposition Date 2019-05-09
Release Date 2019-10-02
Last Version Date 2024-11-20
Entry Detail
PDB ID:
6RNU
Title:
BCL-XL in a complex with a covalent small molecule inhibitor
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.27
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 41 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Bcl-2-like protein 1
Gene (Uniprot):BCL2L1
Chain IDs:A, B
Chain Length:177
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Discovery and optimization of covalent Bcl-xL antagonists.
Bioorg.Med.Chem.Lett. 29 126682 126682 (2019)
PMID: 31606346 DOI: 10.1016/j.bmcl.2019.126682

Abstact

Over the last ten years, targeted covalent inhibition has become a key discipline within medicinal chemistry research, most notably in the development of oncology therapeutics. One area where this approach is underrepresented, however, is in targeting protein-protein interactions. This is primarily because these hydrophobic interfaces lack appropriately located cysteine residues to allow for standard conjugate addition chemistry. Herein, we report our development of the first covalent inhibitors of the antiapoptotic protein B-cell lymphoma extra-large (Bcl-xL), utilizing a sulfonyl fluoride (SF) warhead to selectively covalently modify tyrosine 101 of the BH3 domain-binding groove. These compounds display time-dependent inhibition in a biochemical assay and are cellularly active (U266B1). In addition, compound 7 was further elaborated to generate a chemical-biology probe molecule, which may find utility in understanding the intricacies of Bcl-xL biology.

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Primary Citation of related structures