6RMD image
Deposition Date 2019-05-06
Release Date 2020-07-15
Last Version Date 2024-05-15
Entry Detail
PDB ID:
6RMD
Keywords:
Title:
Structure of ATP bound Plasmodium falciparum IMP-nucleotidase
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 65 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:IMP-specific 5'-nucleotidase, putative
Gene (Uniprot):ISN1
Chain IDs:A
Chain Length:435
Number of Molecules:1
Biological Source:Plasmodium falciparum (isolate 3D7)
Polymer Type:polypeptide(L)
Molecule:IMP-specific 5'-nucleotidase, putative
Gene (Uniprot):ISN1
Chain IDs:B (auth: D)
Chain Length:372
Number of Molecules:1
Biological Source:Plasmodium falciparum (isolate 3D7)
Primary Citation
Structure and catalytic regulation of Plasmodium falciparum IMP specific nucleotidase.
Nat Commun 11 3228 3228 (2020)
PMID: 32591529 DOI: 10.1038/s41467-020-17013-x

Abstact

Plasmodium falciparum (Pf) relies solely on the salvage pathway for its purine nucleotide requirements, making this pathway indispensable to the parasite. Purine nucleotide levels are regulated by anabolic processes and by nucleotidases that hydrolyse these metabolites into nucleosides. Certain apicomplexan parasites, including Pf, have an IMP-specific-nucleotidase 1 (ISN1). Here we show, by comprehensive substrate screening, that PfISN1 catalyzes the dephosphorylation of inosine monophosphate (IMP) and is allosterically activated by ATP. Crystal structures of tetrameric PfISN1 reveal complex rearrangements of domain organization tightly associated with catalysis. Immunofluorescence microscopy and expression of GFP-fused protein indicate cytosolic localization of PfISN1 and expression in asexual and gametocyte stages of the parasite. With earlier evidence on isn1 upregulation in female gametocytes, the structures reported in this study may contribute to initiate the design for possible transmission-blocking agents.

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Primary Citation of related structures