ISDA: 6RLP

Deposition Date 2019-05-02

Release Date 2022-11-23

Last Version Date 2024-06-12

Entry Detail

PDB ID:

6RLP

Keywords:

VIRAL PROTEIN

Title:

Cryo-EM reconstruction of TMV coat protein

Biological Source:

Source Organism:

Tobacco mosaic virus (Taxon ID: 12242)

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

2.30 Å

Aggregation State:

HELICAL ARRAY

Reconstruction Method:

HELICAL

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Capsid protein
Chain IDs:A, C (auth: B), E (auth: C), G (auth: D), I (auth: E), K (auth: F), M (auth: G), O (auth: H), Q (auth: I), S (auth: J), U (auth: K), W (auth: L), Y (auth: M), AA (auth: N), CA (auth: O), EA (auth: P), GA (auth: Q), IA (auth: S), KA (auth: T), MA (auth: U), OA (auth: V), QA (auth: W), SA (auth: X), UA (auth: Y)
Chain Length:3
Number of Molecules:24
Biological Source:Tobacco mosaic virus

UniProt ID:P69687 Pfam ID:PF00721

Polymer Type:polyribonucleotide
Molecule:RNA (5'-R(P*GP*AP*A)-3')
Chain IDs:B (auth: R), D (auth: Z), F (auth: a), H (auth: b), J (auth: c), L (auth: d), N (auth: e), P (auth: f), R (auth: g), T (auth: h), V (auth: i), X (auth: j), Z (auth: k), BA (auth: l), DA (auth: m), FA (auth: n), HA (auth: o), JA (auth: p), LA (auth: q), NA (auth: r), PA (auth: s), RA (auth: t), TA (auth: u), VA (auth: v)
Chain Length:3
Number of Molecules:24
Biological Source:Tobacco mosaic virus

Ligand Molecules

Primary Citation

CM01: a facility for cryo-electron microscopy at the European Synchrotron.

Kandiah, E, Giraud, T, de Maria Antolinos, A, Dobias, F, Effantin, G, Flot, D, Hons, M, Schoehn, G, Susini, J, Svensson, O, Leonard, G.A, Mueller-Dieckmann, C.Show

Acta Crystallogr D Struct Biol 75 528 535 (2019)

PMID: 31205015 DOI: 10.1107/S2059798319006880

Abstact

Recent improvements in direct electron detectors, microscope technology and software provided the stimulus for a `quantum leap' in the application of cryo-electron microscopy in structural biology, and many national and international centres have since been created in order to exploit this. Here, a new facility for cryo-electron microscopy focused on single-particle reconstruction of biological macromolecules that has been commissioned at the European Synchrotron Radiation Facility (ESRF) is presented. The facility is operated by a consortium of institutes co-located on the European Photon and Neutron Campus and is managed in a similar fashion to a synchrotron X-ray beamline. It has been open to the ESRF structural biology user community since November 2017 and will remain open during the 2019 ESRF-EBS shutdown.

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Protein

Chemical

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Primary Citation of related structures

Abstact

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