ISDA

Deposition Date 2019-05-02

Release Date 2021-05-12

Last Version Date 2024-10-09

Entry Detail

PDB ID:

6RLO

Keywords:

IMMUNE SYSTEM

Title:

Crystal structure of AT1412dm Fab fragment in complex with CD9 large extracellular loop

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Cricetulus griseus

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.20 Å

R-Value Free:

0.28

R-Value Work:

0.25

R-Value Observed:

0.25

Space Group:

P 1

Download Validation Report

Macromolecular Entities

Polymer Type:polypeptide(L)
Molecule:AT1412dm Fab Fragment (Heavy Chain)
Chain IDs:A, D (auth: C), G (auth: E), J (auth: G)
Chain Length:223
Number of Molecules:4
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:AT1412dm Fab Fragment (Light Chain)
Chain IDs:B, E (auth: D), H (auth: F), K (auth: H)
Chain Length:220
Number of Molecules:4
Biological Source:Homo sapiens

Protein Blast

Polymer Type:polypeptide(L)
Molecule:CD9 antigen
Gene (Uniprot):CD9
Chain IDs:C (auth: I), F (auth: J), I (auth: K), L
Chain Length:90
Number of Molecules:4
Biological Source:Homo sapiens

UniProt ID:P21926 Pfam ID:PF00335

Ligand Molecules

Primary Citation

Structural basis of a homo-dimerization site in tetraspanin CD9 targeted by a melanoma patient-derived antibody

Neviani, V, Pos, W, Schotte, R, Wagner, K, Go, D.M, Fatmawati, C, Kedde, M, Claassen, Y.B, Kroon-Batenburg, L, Lutz, M, Verdegaal, E.M.E, van der Burg, S.H, Spits, H, Gros, P.Show

To Be Published ? ? ? (?)

Primary Citation of related structures