6RLB image
Deposition Date 2019-05-01
Release Date 2019-08-28
Last Version Date 2024-05-22
Entry Detail
PDB ID:
6RLB
Keywords:
Title:
Structure of the dynein-2 complex; tail domain
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
4.50 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:O6-alkylguanine-DNA alkyltransferase mutant,DYNC2H1 variant protein
Chain IDs:A, B
Chain Length:4513
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:WD repeat-containing protein 60
Gene (Uniprot):DYNC2I1
Chain IDs:C
Chain Length:1066
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:WD repeat-containing protein 34
Gene (Uniprot):DYNC2I2
Chain IDs:D
Chain Length:564
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Cytoplasmic dynein 2 light intermediate chain 1
Gene (Uniprot):DYNC2LI1
Chain IDs:E, F
Chain Length:351
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Dynein light chain roadblock-type 1
Gene (Uniprot):DYNLRB1
Chain IDs:G, H
Chain Length:96
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Dynein light chain 1, cytoplasmic
Gene (Uniprot):DYNLL1
Chain IDs:I, J, K, L, M, N
Chain Length:89
Number of Molecules:6
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structure of the dynein-2 complex and its assembly with intraflagellar transport trains.
Nat.Struct.Mol.Biol. 26 823 829 (2019)
PMID: 31451806 DOI: 10.1038/s41594-019-0286-y

Abstact

Dynein-2 assembles with polymeric intraflagellar transport (IFT) trains to form a transport machinery that is crucial for cilia biogenesis and signaling. Here we recombinantly expressed the ~1.4-MDa human dynein-2 complex and solved its cryo-EM structure to near-atomic resolution. The two identical copies of the dynein-2 heavy chain are contorted into different conformations by a WDR60-WDR34 heterodimer and a block of two RB and six LC8 light chains. One heavy chain is steered into a zig-zag conformation, which matches the periodicity of the anterograde IFT-B train. Contacts between adjacent dyneins along the train indicate a cooperative mode of assembly. Removal of the WDR60-WDR34-light chain subcomplex renders dynein-2 monomeric and relieves autoinhibition of its motility. Our results converge on a model in which an unusual stoichiometry of non-motor subunits controls dynein-2 assembly, asymmetry, and activity, giving mechanistic insight into the interaction of dynein-2 with IFT trains and the origin of diverse functions in the dynein family.

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