6RKF image
Entry Detail
PDB ID:
6RKF
Keywords:
Title:
Structure of human DASPO
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2019-04-30
Release Date:
2020-03-11
Method Details:
Experimental Method:
Resolution:
3.22 Å
R-Value Free:
0.27
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:D-aspartate oxidase
Mutations:C141Y, C143G
Chain IDs:A, B, C, D, E, F
Chain Length:350
Number of Molecules:6
Biological Source:Homo sapiens
Primary Citation
Structure and kinetic properties of human d-aspartate oxidase, the enzyme-controlling d-aspartate levels in brain.
Faseb J. 34 1182 1197 (2020)
PMID: 31914658 DOI: 10.1096/fj.201901703R

Abstact

d-Amino acids are the "wrong" enantiomers of amino acids as they are not used in proteins synthesis but evolved in selected functions. On this side, d-aspartate (d-Asp) plays several significant roles in mammals, especially as an agonist of N-methyl-d-aspartate receptors (NMDAR), and is involved in relevant diseases, such as schizophrenia and Alzheimer's disease. In vivo modulation of d-Asp levels represents an intriguing task to cope with such pathological states. As little is known about d-Asp synthesis, the only option for modulating the levels is via degradation, which is due to the flavoenzyme d-aspartate oxidase (DASPO). Here we present the first three-dimensional structure of a DASPO enzyme (from human) which belongs to the d-amino acid oxidase family. Notably, human DASPO differs from human d-amino acid oxidase (attributed to d-serine degradation, the main coagonist of NMDAR) showing peculiar structural features (a specific active site charge distribution), oligomeric state and kinetic mechanism, and a higher FAD affinity and activity. These results provide useful insights into the structure-function relationships of human DASPO: modulating its activity represents now a feasible novel therapeutic target.

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