6RJP image
Entry Detail
PDB ID:
6RJP
Title:
Bfl-1 in complex with alpha helical peptide
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2019-04-29
Release Date:
2019-10-30
Method Details:
Experimental Method:
Resolution:
2.57 Å
R-Value Free:
0.26
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
P 31 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Bcl-2-related protein A1
Chain IDs:A, B
Chain Length:171
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Bcl-2-like protein 11
Chain IDs:C, D
Chain Length:17
Number of Molecules:2
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
AIB C ALA modified residue
Primary Citation
N-locking stabilization of covalent helical peptides: Application to Bfl-1 antagonists.
Chem.Biol.Drug Des. 95 412 426 (2020)
PMID: 31898401 DOI: 10.1111/cbdd.13661

Abstact

Recently, it was reported that tetrapeptides cyclized via lactam bond between the amino terminus and a glutamic residue in position 4 (termed here N-lock) can nucleate helix formation in longer peptides. We applied such strategy to derive N-locked covalent BH3 peptides that were designed to selectively target the anti-apoptotic protein Bfl-1. The resulting agents were soluble in aqueous buffer and displayed a remarkable (low nanomolar) affinity for Bfl-1 and cellular activity. The crystal structure of the complex between such N-locked covalent peptide and Bfl-1 provided insights on the geometry of the N-locking strategy and of the covalent bond between the agent and Bfl-1.

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Primary Citation of related structures